Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30648
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25930.1 68418.m03081 leucine-rich repeat family protein / pr...    33   0.16 
At4g22180.1 68417.m03206 F-box family protein contains F-box dom...    29   2.0  

>At5g25930.1 68418.m03081 leucine-rich repeat family protein /
           protein kinase family protein contains similarity to
           Swiss-Prot:P47735 receptor-like protein kinase 5
           precursor [Arabidopsis thaliana]; contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1005

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +1

Query: 28  CGKILVLRCWKYNFT-RFYSRIYFKTSTYSFQISSFDQFSEMLPSNV 165
           CG +L ++    +F+ +F SRI+  +S YS Q+S+ + F+  LP NV
Sbjct: 401 CGTLLTVQLQNNDFSGKFPSRIWNASSMYSLQVSN-NSFTGELPENV 446


>At4g22180.1 68417.m03206 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 85  RIYFKTSTYSFQISSFDQFSEMLPSNVMFVVFIMK 189
           ++YF TSTY ++   FD FS  +P  +     IM+
Sbjct: 224 KLYFSTSTYKYEFRIFD-FSREIPQQIFQGYVIMQ 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,881,596
Number of Sequences: 28952
Number of extensions: 250600
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)