Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30647
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   1.1  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   3.3  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   3.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   3.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   7.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   7.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   7.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   7.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   7.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   7.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   7.6  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 367 DKCRIFYCYCLDGWKSS 417
           DK   F C C +GW+ +
Sbjct: 85  DKINAFQCICKEGWEGA 101



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 367 DKCRIFYCYCLDGWK 411
           D+   F C C +GWK
Sbjct: 123 DRIADFECNCKNGWK 137


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 514 YTENLELISQGGWRI 470
           Y E +EL  +GGW++
Sbjct: 299 YNEIVELQKEGGWKV 313


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 612 LVKSARVGTTALPYFCREAVMRFGLKG 532
           L K  R+ +   PY C+  ++RF   G
Sbjct: 93  LTKHLRIHSGEKPYECKLCLLRFSQSG 119


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 612 LVKSARVGTTALPYFCREAVMRFGLKG 532
           L K  R+ +   PY C+  ++RF   G
Sbjct: 349 LTKHLRIHSGEKPYECKLCLLRFSQSG 375


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 518 IAVAPPFKPKRITASRQK*GRAVVPTRADFTRGPTTSQKRGLKSNS 655
           ++ +PP KP   TAS+       + + A  T   ++++K G  +N+
Sbjct: 149 VSTSPPGKPATSTASQN------LSSPASSTSSTSSTEKAGTNNNN 188


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 518 IAVAPPFKPKRITASRQK*GRAVVPTRADFTRGPTTSQKRGLKSNS 655
           ++ +PP KP   TAS+       + + A  T   ++++K G  +N+
Sbjct: 149 VSTSPPGKPATSTASQN------LSSPASSTSSTSSTEKAGTNNNN 188


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 518 IAVAPPFKPKRITASRQK*GRAVVPTRADFTRGPTTSQKRGLKSNS 655
           ++ +PP KP   TAS+       + + A  T   ++++K G  +N+
Sbjct: 149 VSTSPPGKPATSTASQN------LSSPASSTSSTSSTEKAGTNNNN 188


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 518 IAVAPPFKPKRITASRQK*GRAVVPTRADFTRGPTTSQKRGLKSNS 655
           ++ +PP KP   TAS+       + + A  T   ++++K G  +N+
Sbjct: 149 VSTSPPGKPATSTASQN------LSSPASSTSSTSSTEKAGTNNNN 188


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 518 IAVAPPFKPKRITASRQK*GRAVVPTRADFTRGPTTSQKRGLKSNS 655
           ++ +PP KP   TAS+       + + A  T   ++++K G  +N+
Sbjct: 105 VSTSPPGKPATSTASQN------LSSPASSTSSTSSTEKAGTNNNN 144


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 518 IAVAPPFKPKRITASRQK*GRAVVPTRADFTRGPTTSQKRGLKSNS 655
           ++ +PP KP   TAS+       + + A  T   ++++K G  +N+
Sbjct: 149 VSTSPPGKPATSTASQN------LSSPASSTSSTSSTEKAGTNNNN 188


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -1

Query: 621 VGPLVKSARVGTTALPYFCREAVMRFGLKGGATAITILRT 502
           V  L +  RV T   PY C    M+F       A  ++ T
Sbjct: 203 VANLRRHLRVHTGERPYGCEHCSMKFSDSNQLKAHVLIHT 242


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 518 IAVAPPFKPKRITASRQK*GRAVVPTRADFTRGPTTSQKRGLKSNS 655
           ++ +PP KP   TAS+       + + A  T   ++++K G  +N+
Sbjct: 149 VSTSPPGKPATSTASQN------LSSPASSTSSTSSTEKAGTNNNN 188


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,138
Number of Sequences: 336
Number of extensions: 3389
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)