Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30647
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31153| Best HMM Match : fn3 (HMM E-Value=1.4e-20)                   32   0.41 
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         28   6.6  
SB_16409| Best HMM Match : DUF948 (HMM E-Value=0.57)                   28   6.6  
SB_57603| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_31153| Best HMM Match : fn3 (HMM E-Value=1.4e-20)
          Length = 407

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +1

Query: 466 RKCATHLEI*VLSSQYS-----NSGCPTFQTETHYSFTAEIGQGGGTYPRRLH*RSYHQS 630
           RK A H ++ VL S        +S C TF+ ++H +   +I    G  P+R   R++HQ 
Sbjct: 221 RKMAAHTKMPVLISDTGLDLRYSSECTTFRRKSHRNLLNDIQHQLGPNPQRSEQRNHHQL 280

Query: 631 KKG 639
           + G
Sbjct: 281 RSG 283


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 130 NANNTFYECTCANVHCG 80
           N  N  YEC C   HCG
Sbjct: 683 NGTNKLYECKCGQRHCG 699


>SB_16409| Best HMM Match : DUF948 (HMM E-Value=0.57)
          Length = 495

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 53  RRNLASLNIAAVNIRACTLVKSVIS 127
           RR LA L I A+  + C +VKSVIS
Sbjct: 297 RRALAILQIFAIRKKKCLMVKSVIS 321


>SB_57603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 545 KRITASRQK*GRAVVPTRADFTRGPTTSQKRGLK 646
           KR  A R K     VP  A  TRGP T  +RGL+
Sbjct: 345 KRQIAHRVKITPKTVPLGAPPTRGPPTRPRRGLR 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,962,458
Number of Sequences: 59808
Number of extensions: 378401
Number of successful extensions: 714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)