Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30646
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQQ5 Cluster: Tyrosine 3-monooxygenase/tryptophan 5-m...    50   5e-05
UniRef50_P62258 Cluster: 14-3-3 protein epsilon; n=53; Eukaryota...    45   0.002
UniRef50_UPI0000DD7EA9 Cluster: PREDICTED: similar to tyrosine 3...    34   3.9  
UniRef50_Q9LN02 Cluster: T6D22.14; n=4; Arabidopsis thaliana|Rep...    33   8.9  

>UniRef50_Q1HQQ5 Cluster: Tyrosine 3-monooxygenase/tryptophan
           5-monooxygenase activation protein epsilon polypeptide;
           n=1; Aedes aegypti|Rep: Tyrosine
           3-monooxygenase/tryptophan 5-monooxygenase activation
           protein epsilon polypeptide - Aedes aegypti (Yellowfever
           mosquito)
          Length = 226

 Score = 50.0 bits (114), Expect = 5e-05
 Identities = 22/34 (64%), Positives = 28/34 (82%)
 Frame = +1

Query: 1   DNLTLWTSDMQGDGESADAEQKEPAQDGEDQDVS 102
           DNLTLWTSDMQGDG+  + ++++  QD EDQDVS
Sbjct: 194 DNLTLWTSDMQGDGDGGE-QREQVVQDVEDQDVS 226


>UniRef50_P62258 Cluster: 14-3-3 protein epsilon; n=53;
           Eukaryota|Rep: 14-3-3 protein epsilon - Homo sapiens
           (Human)
          Length = 255

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 21/32 (65%), Positives = 24/32 (75%)
 Frame = +1

Query: 1   DNLTLWTSDMQGDGESADAEQKEPAQDGEDQD 96
           DNLTLWTSDMQGDGE    + KE  QD ED++
Sbjct: 226 DNLTLWTSDMQGDGEE---QNKEALQDVEDEN 254


>UniRef50_UPI0000DD7EA9 Cluster: PREDICTED: similar to tyrosine
           3-monooxygenase/tryptophan 5-monooxygenase activation
           protein; n=1; Homo sapiens|Rep: PREDICTED: similar to
           tyrosine 3-monooxygenase/tryptophan 5-monooxygenase
           activation protein - Homo sapiens
          Length = 305

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 10  TLWTSDMQGDGESADAEQKEPAQDGEDQD 96
           TLWTS MQGDGE    + KE  Q+ ED++
Sbjct: 279 TLWTSGMQGDGEE---QNKEALQEVEDEN 304


>UniRef50_Q9LN02 Cluster: T6D22.14; n=4; Arabidopsis thaliana|Rep:
           T6D22.14 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 2254

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = -3

Query: 688 INEYCITLRLIAISISVDKLTNI-CNITYANLSAAGGMCSSAHPLRAQ*ILPQVHNLNLA 512
           + +YC TL   + S+S+  L+ I        L++    C   + + A        NL L 
Sbjct: 723 LEQYCQTL--FSKSLSLSSLSKIDLGALEETLNSVRKTCDHPYVMDASLKQLLTKNLELH 780

Query: 511 QVTTTDRPGGGALHFILEILCEIKKNKLK 425
           ++   +    G LH + ++L  IKKN LK
Sbjct: 781 EILDVEIKASGKLHLLDKMLTHIKKNGLK 809


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,917,723
Number of Sequences: 1657284
Number of extensions: 11245005
Number of successful extensions: 25809
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25796
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)