Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30646
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    27   2.6  
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    26   6.0  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    25   7.9  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 1   DNLTLWTSDMQGDGESADAEQKEPAQDGEDQ 93
           DNLTLWTSD + + +SA  E    A   E++
Sbjct: 227 DNLTLWTSDAEYN-QSAKEEAPAAAAASENE 256


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 1   DNLTLWTSDMQGDGESADAEQKEPAQD 81
           DNLTLWTSD +    +A     E AQ+
Sbjct: 228 DNLTLWTSDAEYSAAAAGG-NTEGAQE 253


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 538 PQVHNLNLAQVTTTDRP 488
           P V+N++++Q TTT RP
Sbjct: 309 PVVYNMDVSQTTTTTRP 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,581
Number of Sequences: 5004
Number of extensions: 46053
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)