Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30646
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448...    35   0.071
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760...    33   0.29 
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629...    31   0.88 
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065...    29   2.7  
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803...    29   3.5  
01_01_0181 - 1548392-1548466,1548689-1549379,1549475-1549604,154...    29   3.5  
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817...    29   4.7  
02_05_0921 + 32739495-32739696,32739815-32740002,32740132-327403...    28   8.2  

>08_02_1026 +
           23743186-23743686,23743793-23743915,23744734-23744850,
           23744948-23745001
          Length = 264

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 17/25 (68%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +1

Query: 1   DNLTLWTSDMQGDG--ESADAEQKE 69
           DNLTLWTSDMQ DG  E  DA + E
Sbjct: 237 DNLTLWTSDMQDDGGDEMRDATKPE 261


>11_06_0036 +
           19474848-19475188,19475696-19475774,19475880-19476002,
           19476970-19477086,19477169-19477228
          Length = 239

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 1   DNLTLWTSDMQGDGESADAEQKEPAQDGE 87
           DNLTLWTSD   DG     E   P + G+
Sbjct: 210 DNLTLWTSDANDDGGDEIKEAAAPKEPGD 238


>03_05_0881 +
           28461857-28462263,28462357-28462435,28462798-28462920,
           28463632-28463748,28463861-28463917
          Length = 260

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   DNLTLWTSDMQGDGESADAEQKEPAQDG 84
           DNLTLWTSD   DG     E  +P  +G
Sbjct: 232 DNLTLWTSDNAEDGGDEIKEAAKPEGEG 259


>08_02_0753 -
           20805672-20805731,20805825-20805941,20806394-20806516,
           20806700-20806778,20806867-20807258
          Length = 256

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 1   DNLTLWTSDMQGD-GESADAEQKEPAQDGE 87
           DNLTLWTSD+  D G+      K  A +G+
Sbjct: 227 DNLTLWTSDLTEDGGDEVKEASKGDACEGQ 256


>04_04_0141 +
           23079516-23079925,23080006-23080084,23080204-23080326,
           23081655-23081771,23081886-23081945
          Length = 262

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 1   DNLTLWTSDMQGDGESADAEQKEPAQDGED 90
           DNLTLWTSD+  D  +A+  ++ P +D  +
Sbjct: 233 DNLTLWTSDISED--TAEEIREAPKRDSSE 260


>01_01_0181 -
           1548392-1548466,1548689-1549379,1549475-1549604,
           1549704-1549884
          Length = 358

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 107 HYETSWSSPSCAGSFCSASADSPSPCMSEV 18
           H + S S+ + AGS  +A+A  P PC SE+
Sbjct: 214 HIDPSPSTSTSAGSTAAAAAFQPLPCFSEL 243


>06_03_0734 -
           23980576-23980671,23980799-23981338,23981493-23981714,
           23981791-23982144,23982460-23982546
          Length = 432

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 398 RK*LKQFKCEYSKCCNTKEAESPDSA 321
           R+ L++ KC  + CC T E  SP +A
Sbjct: 149 RRQLQKLKCSENGCCTTDEPRSPTTA 174


>02_05_0921 +
           32739495-32739696,32739815-32740002,32740132-32740330,
           32740426-32740604,32740760-32740910,32741165-32741298,
           32741436-32741615
          Length = 410

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = -3

Query: 655 AISISVDKLTNICNITYANLSAAGGMCSSAHPLRAQ*ILPQVHNLNLAQVTTTDRPGGGA 476
           A+ ++V  + N     Y N     G C+ +  L+    L   H+  + +V T      GA
Sbjct: 287 AVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLAMKHDPRVRRVDTVRAYSFGA 346

Query: 475 LHFILEILCEIKKN 434
           L+F+ E+  E+ ++
Sbjct: 347 LYFV-EVDIELSED 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,701,516
Number of Sequences: 37544
Number of extensions: 329691
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)