Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30646
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)            31   0.68 
SB_26942| Best HMM Match : TNFR_c6 (HMM E-Value=0.26)                  29   4.8  
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   28   6.3  
SB_56065| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_46707| Best HMM Match : DSL (HMM E-Value=3.1)                       28   8.4  
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                      28   8.4  

>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
          Length = 1728

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 383  QFKCEYSKCCNTKEAESPDSARRACQRDRS 294
            +F+C+Y+K CN K+ E  + A R  ++  S
Sbjct: 1571 EFECDYTKACNPKKQEKVEEAGRRMKKKES 1600


>SB_26942| Best HMM Match : TNFR_c6 (HMM E-Value=0.26)
          Length = 327

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -3

Query: 616 NITYANLSAAGGMCSSAHPLRAQ*ILPQVHNLNLAQVTTTDRPGGGAL 473
           N+  AN  A  G     HPL  +   PQ  N+ + Q+ T      G L
Sbjct: 239 NLAQANGQAGHGCIGDEHPLAIRQPPPQTQNMQMLQMVTLYHASNGNL 286


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -3

Query: 676 CITLRLIAISISVDKLTNICNITYANLSAAGGMCSSAHPLRAQ*ILP 536
           CI LRL       D+L    + T+A  ++AGG C SA  +  Q I+P
Sbjct: 351 CIELRLQTQVTDPDQLAGDPSCTWACQTSAGGSCGSATKV-GQTIIP 396


>SB_56065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -2

Query: 386 KQFKCEYSK---CCNTKEAESPDSARR 315
           KQFK  +S+   CC  ++ +S DSARR
Sbjct: 301 KQFKSGFSRILCCCRGRDPKSSDSARR 327


>SB_46707| Best HMM Match : DSL (HMM E-Value=3.1)
          Length = 210

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 541 LPQVHNLNLAQVTTTDRPGGGALHFILEILCEIKKNKLKY 422
           L Q+H  ++ ++    RP GG L +    +CE ++ +L +
Sbjct: 113 LEQIHEFDINEMKWYSRPRGGGLQYRKGAVCEWRQFRLAF 152


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 1   DNLTLWTSDMQGDGESAD 54
           DNLTLWTS+   +G+  D
Sbjct: 231 DNLTLWTSEQDQEGQDDD 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,991,536
Number of Sequences: 59808
Number of extensions: 372704
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)