Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30646
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74042-1|CAA98536.1|  444|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U61957-5|AAB03417.3|  559|Caenorhabditis elegans Suppressor of c...    30   1.4  
U61957-4|AAM81129.1|  558|Caenorhabditis elegans Suppressor of c...    30   1.4  
AF068919-1|AAC39129.1|  559|Caenorhabditis elegans Ras-binding p...    30   1.4  
AF054827-1|AAC25697.1|  559|Caenorhabditis elegans leucine-rich ...    30   1.4  
Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    28   5.6  

>Z74042-1|CAA98536.1|  444|Caenorhabditis elegans Hypothetical
           protein T11F9.1 protein.
          Length = 444

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 182 ARDRPLTVRFRLWKVYHM*YNTLVCILTVV*KT-LSNLGSCPADMPSSHCPAIPLLSYYN 358
           A   P+ V+ R W V    + T VCI+ ++  T LS +        SSH   + LL++++
Sbjct: 22  AYSEPVYVKERFWMVAI--FGTAVCIINILENTFLSFMLFKKKSYRSSHMLYLALLAFFD 79

Query: 359 IW 364
           +W
Sbjct: 80  VW 81


>U61957-5|AAB03417.3|  559|Caenorhabditis elegans Suppressor of clr
           protein 2, isoforma protein.
          Length = 559

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 544 ILPQVHNLNLAQVTTTDRPGGGALHFILEILCEIKKNKL 428
           +LP++H +NL++   T  P GG   F+  +   ++ N++
Sbjct: 302 MLPKIHTVNLSRNELTAFPAGGPQQFVSTVTINMEHNQI 340


>U61957-4|AAM81129.1|  558|Caenorhabditis elegans Suppressor of clr
           protein 2, isoformb protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 544 ILPQVHNLNLAQVTTTDRPGGGALHFILEILCEIKKNKL 428
           +LP++H +NL++   T  P GG   F+  +   ++ N++
Sbjct: 301 MLPKIHTVNLSRNELTAFPAGGPQQFVSTVTINMEHNQI 339


>AF068919-1|AAC39129.1|  559|Caenorhabditis elegans Ras-binding
           protein SUR-8 protein.
          Length = 559

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 544 ILPQVHNLNLAQVTTTDRPGGGALHFILEILCEIKKNKL 428
           +LP++H +NL++   T  P GG   F+  +   ++ N++
Sbjct: 302 MLPKIHTVNLSRNELTAFPAGGPQQFVSTVTINMEHNQI 340


>AF054827-1|AAC25697.1|  559|Caenorhabditis elegans leucine-rich
           repeat protein SOC-2 protein.
          Length = 559

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 544 ILPQVHNLNLAQVTTTDRPGGGALHFILEILCEIKKNKL 428
           +LP++H +NL++   T  P GG   F+  +   ++ N++
Sbjct: 302 MLPKIHTVNLSRNELTAFPAGGPQQFVSTVTINMEHNQI 340


>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 1   DNLTLWTSDMQGDGESADAEQK 66
           DNLTLWTSD+  + +  +  Q+
Sbjct: 224 DNLTLWTSDVGAEDQEQEGNQE 245


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 1   DNLTLWTSDMQGDGESADAEQK 66
           DNLTLWTSD+  + +  +  Q+
Sbjct: 224 DNLTLWTSDVGAEDQEQEGNQE 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,849,495
Number of Sequences: 27780
Number of extensions: 280962
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)