Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30646
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   4.9  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   8.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   8.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 622 ICNITYANLSAAGGM 578
           IC ++++N S AGGM
Sbjct: 225 ICKLSHSNASVAGGM 239


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 622 ICNITYANLSAAGGM 578
           IC ++++N S AGGM
Sbjct: 225 ICKLSHSNASVAGGM 239


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 287 NLGSCPADMPSSHCPAIPLLSYYNIWSIHI*IALITYEY 403
           N+ +C  D  +    +   L  Y IW   + + LI Y Y
Sbjct: 198 NMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFLIIYSY 236


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 405 VIEIFVYFNLFFLISQSISKMKCSAPP 485
           +I +F+Y+N+F  +     K + +  P
Sbjct: 357 IIMVFLYYNIFKALRNRARKARANRKP 383


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 287 NLGSCPADMPSSHCPAIPLLSYYNIWSIHI*IALITYEY 403
           N+ +C  D  +    +   L  Y IW   + + LI Y Y
Sbjct: 74  NMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFLIIYSY 112


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 329 DSARRACQRDRSRD 288
           +   R+C RDRSR+
Sbjct: 247 NDGERSCSRDRSRE 260


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 329 DSARRACQRDRSRD 288
           +   R+C RDRSR+
Sbjct: 247 NDGERSCSRDRSRE 260


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 329 DSARRACQRDRSRD 288
           +   R+C RDRSR+
Sbjct: 247 NDGERSCSRDRSRE 260


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 329 DSARRACQRDRSRD 288
           +   R+C RDRSR+
Sbjct: 247 NDGERSCSRDRSRE 260


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 329 DSARRACQRDRSRD 288
           +   R+C RDRSR+
Sbjct: 247 NDGERSCSRDRSRE 260


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 329 DSARRACQRDRSRD 288
           +   R+C RDRSR+
Sbjct: 247 NDGERSCSRDRSRE 260


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 329 DSARRACQRDRSRD 288
           +   R+C RDRSR+
Sbjct: 247 NDGERSCSRDRSRE 260


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 365 SKCCNTKEAESPDSARRACQRDRSRD 288
           S+  + +   S  S  R+C RDR+R+
Sbjct: 219 SRTHDFQHTSSRYSRERSCSRDRNRE 244


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 329 DSARRACQRDRSRD 288
           +   R+C RDRSR+
Sbjct: 247 NDGERSCSRDRSRE 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,473
Number of Sequences: 438
Number of extensions: 3851
Number of successful extensions: 45
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)