Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30645
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    29   0.64 
SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    27   2.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   4.5  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    26   4.5  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   7.9  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    25   7.9  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.9  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   7.9  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    25   7.9  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 309  WDEHHNLHIEAGLHDVL-ALFMVMHE 235
            +D HH L I+  LHD+L ALF ++ +
Sbjct: 1182 YDSHHKLWIQDRLHDILKALFFILKD 1207


>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +3

Query: 357 KSQHETRDGDVVKGYYSLHEADGSIRVVEYSADKHNGFNAVVKHTAPTKHASLYNSTTII 536
           KS     D   V+G            + E +  K +G   V+   APT H+SL N TT I
Sbjct: 30  KSAMSAADDKKVQGALKKLNMQNLAGIQEVNMFKEDG--GVINFRAPTVHSSLPNETTAI 87


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 336  LRFCIQMHIWDEHHNLHIEAGLHDVLALFMV 244
            +R C QMH+W+E   L++    +D  A  M+
Sbjct: 1345 IRACDQMHLWNEAVFLYVHDQSYDNAAAVMM 1375


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 265 CTGAVHGDARARVQRV*SELHDALLLVQH 179
           CT  + G A   +  V   LHDA+++V+H
Sbjct: 375 CTLILRGGADQFIAEVERSLHDAIMIVKH 403


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 246 P*TAPVHHGDQPQYEDYDAHPKYAFEYKIEDPHTGDLK 359
           P T P HH   P + + +  P Y F+  +    T  L+
Sbjct: 171 PHTRPPHHPPHPHFHNNNYPPPYCFQSPVSPGATVPLQ 208


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 495 PTKHASLYNSTTIIKNAFILAVA*NSNHPNLHHECRKGDEGPVISV 632
           P+  +   ++ + I N  +     N+N P L+ +   G EGP I +
Sbjct: 71  PSAESEYLSTRSTITNTAMKDFLRNANLPGLNADTLSGSEGPSIGI 116


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 395 LHDITVASLVLALQVPSVRVFDFVFKCIFGM--SIIIFILRLVSMMYW 258
           L  I   S V++  V S++VF  V    F    +++IFILR+VS+  W
Sbjct: 31  LSTILYVSAVISWNV-SLKVFGNVLLPGFLTIRTVVIFILRIVSLFLW 77


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 111 CFIPVYY*TRCDSWSW 158
           C++ +YY   C SW+W
Sbjct: 622 CWVLLYYYQGCPSWTW 637


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 220 HAAPVLVHHHEQRQYIMETSLNMKIMMLIPNMHLNTKSKTLT 345
           H  PVL+HH+E+ +   E    +  +  I  +  NT+   +T
Sbjct: 849 HTTPVLLHHNERAELATEAYTPLTSLEGIVILKKNTEDIEMT 890


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,636
Number of Sequences: 5004
Number of extensions: 57080
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)