Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30645
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    31   0.88 
04_04_1357 + 32860677-32860781,32861484-32861588,32861678-328617...    29   2.7  
02_04_0648 - 24716249-24717841                                         29   4.7  
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    28   6.2  
07_03_0526 - 19046900-19047083,19049061-19049464                       28   8.2  
04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285     28   8.2  

>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +1

Query: 136 HDVTHGHGNEGQSYHVVPVAAHHGAPTIHAAP---VLVHHHEQRQYIMETSLN 285
           HD  H HG+    +H      HH     H  P   V  HHH+++Q+  E   N
Sbjct: 540 HDHRHRHGHSHGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHSHEAGRN 592


>04_04_1357 +
           32860677-32860781,32861484-32861588,32861678-32861728,
           32861829-32861949,32862495-32862616,32863032-32863133,
           32863226-32863300,32863391-32863470,32863601-32863751,
           32863850-32864080,32864221-32864517,32864638-32864751,
           32864857-32865030
          Length = 575

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 312 IWDEHHNLHIEAGLHDVLALFMVMHEHGCSVYSRSSMMRC 193
           +W++  +  +E GLHD+L L +  H+     +SR  M RC
Sbjct: 489 VWNQTFDFVVEDGLHDMLMLEVYDHD----TFSRDYMGRC 524


>02_04_0648 - 24716249-24717841
          Length = 530

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 109 RDGVYGHDCSRDAL--GYSRLSVQVLAREL 26
           +DG YGHD  R +L  GYSR  +   AR+L
Sbjct: 142 KDGFYGHDFIRTSLLDGYSRYGMMGDARKL 171


>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 455 VGGVFHNTDRSISFMQRVVALHDITVASL 369
           +GGVFHN D  +SF    +   D TVAS+
Sbjct: 737 MGGVFHNEDGVLSFFIGSLGNVDQTVASI 765


>07_03_0526 - 19046900-19047083,19049061-19049464
          Length = 195

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 588 HHECRKGDEGPVISVVGLKQRFNQNFS 668
           H  C+   + PV+ V GL+QRF Q  S
Sbjct: 108 HKVCQTHSKEPVVLVAGLRQRFCQQCS 134


>04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285
          Length = 488

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 109 AVSSQSIIRHDVTHGHGNEGQSYHVVPVAAHHG 207
           AV +  ++RH V H  G +G+  H   V  H G
Sbjct: 149 AVYNIGLLRHSVAHPGGGDGEHGHYYIVTLHPG 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,779,396
Number of Sequences: 37544
Number of extensions: 406908
Number of successful extensions: 1005
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)