Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30645
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 34 0.13
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26) 33 0.29
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 30 2.1
SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022) 29 4.8
SB_16073| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +1
Query: 115 SSQSIIRHDVTHGHGNEGQSYHVVPVAAHHGAPTIHAAPVLVHHHEQRQYIMETSLNMKI 294
SS SII + H H + S ++ + HH P+ ++ +++HHH +S ++ I
Sbjct: 255 SSSSIII--IIHHHHHPSSSSSIIIIIHHHHHPSSSSSIIIIHHHHH----PSSSSSIII 308
Query: 295 MMLIPNMHLNTKSKTLTL 348
+++I + H + S ++ +
Sbjct: 309 IIIIHHHHHPSSSSSIII 326
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +1
Query: 115 SSQSIIRHD----VTHGHGNEGQSYHVVPVAAHHGAPTIHAAPVLVHHHEQRQYIMETSL 282
SS SII H + H H + +H + HH + IH ++HH + +SL
Sbjct: 336 SSSSIIHHHPSSIIIHHHPSSSIIHHPSSIIHHHPSSIIHHPSSIIHHPSSSSSSLSSSL 395
Query: 283 N 285
+
Sbjct: 396 S 396
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = +1
Query: 115 SSQSIIRHDVTHGHGNEGQSYHVVPVAAHHGAPT-----IHAAP--VLVHHHEQRQYIME 273
SS SII + H H + S ++ + HH P+ IH P +++HHH I
Sbjct: 302 SSSSIIIIIIIHHHHHPSSSSSIIIIIHHHHHPSSSSSIIHHHPSSIIIHHHPSSSIIHH 361
Query: 274 TS 279
S
Sbjct: 362 PS 363
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 118 SQSIIRHDVTHGHGNEGQSYHVVPVAAHHGAPTIHAAPVLVHHH 249
S SII + H H + S ++ + HH + + +++HHH
Sbjct: 239 SSSIIIIIIIHHHHHPSSSSIIIIIHHHHHPSSSSSIIIIIHHH 282
>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
Length = 1362
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 282 QYEDYDAHPKYAFEYKIEDPHTGDLKSQH---ETRDGDVVKGYYSLHEADGSIRVVEYSA 452
+YE +H K + K++ H GD + H TR G V Y ++ + S+ + E+SA
Sbjct: 1185 RYEGEWSHGKISGFGKMKYMH-GDTYTGHWRDNTRHGHGVMSYGAMSSSAASVYIGEWSA 1243
Query: 453 DKHNGFNAV 479
D+ NG+ +
Sbjct: 1244 DRKNGYGTM 1252
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/75 (22%), Positives = 27/75 (36%)
Frame = +3
Query: 273 DQPQYEDYDAHPKYAFEYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIRVVEYSA 452
D +DY + + A YK + D + HE D D + ++ + A
Sbjct: 568 DNRASDDYTTNDEEANNYKTNNNAPDDDTTNHEATDNDAPDHNTTYYDTPDDYTTNDEEA 627
Query: 453 DKHNGFNAVVKHTAP 497
D + N H AP
Sbjct: 628 DNYKTNNDTTNHEAP 642
>SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 285 YEDYDAHPKYAFEYKIEDPHTGDLKSQHE 371
Y+ YD + KY F +K DP+ D+ E
Sbjct: 140 YDKYDKYDKYDFPWKAIDPNLPDMPEDKE 168
>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
Length = 616
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +1
Query: 172 SYHVVPVAAHHGAPTIHAAPVLVHHHEQRQYIMETSLNMKIMMLIPNMHLNTKSKTLTLG 351
++HVV + A+ TI A V V +++ N+ ++++ N+H+ T T+
Sbjct: 280 NFHVVTIRANLHEVTIRA-DVHVVTIRGNLHVVTIRANLHVVIIRANLHVVTIRANSTVP 338
Query: 352 T*RANTRLATV 384
RAN L T+
Sbjct: 339 IIRANLHLVTI 349
>SB_16073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = -2
Query: 354 GPQCEGLRFCIQMHIWDEHHNLHIEAGLHDVLAL----FMVMHEHGCSVYSRSSMMRCY 190
GP G I+ + DEHHNL EA D+ L V ++GC S ++ Y
Sbjct: 10 GPVGAGKTSAIRA-LCDEHHNLETEAKASDITGLRKATTTVAMDYGCLTLSDGEAVQLY 67
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 393 KGYYSLHEADGSIRVVEYSADKHNGFNAVVKHTAP 497
KG Y H+ DG R +EY + G+ HT P
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY-LPPAHTRP 1775
>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1080
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 261 VHHGDQPQYEDYDAHPKYAFEYKIEDPHTGD 353
V GD ++Y A+ A+ Y +EDP T D
Sbjct: 1046 VTDGDHISDDEYRAYEDGAYTYPVEDPFTDD 1076
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,653,374
Number of Sequences: 59808
Number of extensions: 473295
Number of successful extensions: 1425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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