Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30645
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024805-13|AAK39335.1|  246|Caenorhabditis elegans Hypothetical...    32   0.34 
U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical pr...    31   0.79 
AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans GDP-4-keto-6-...    31   0.79 
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    31   0.79 
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine re...    29   3.2  
Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm rece...    28   7.4  

>AC024805-13|AAK39335.1|  246|Caenorhabditis elegans Hypothetical
           protein Y51H7C.2 protein.
          Length = 246

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +3

Query: 438 VEYSADKHNGF-NAVVKHTAPTKHASLYNSTTIIKNAFILAVA*NS-NHPNLHHECRKGD 611
           V+ + D HN F +++ K T  TK      +T I+K  + + +A  + NH N   +C KG 
Sbjct: 24  VQQTLDAHNEFRSSIAKGTYVTKGLLHAPATNIMKMKWNVTIATAAQNHAN---KCPKGH 80

Query: 612 EGPVISVVG 638
           +GP+  V G
Sbjct: 81  DGPLEGVSG 89


>U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical
           protein R01H2.5 protein.
          Length = 315

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 25/82 (30%), Positives = 39/82 (47%)
 Frame = -3

Query: 533 DGSTVVQARMLCRSSVLDDCVETIVLVGGVFHNTDRSISFMQRVVALHDITVASLVLALQ 354
           D   + + R L  S      +    +VGG+FHN   ++ F ++ +A++D      VLAL 
Sbjct: 41  DLENLEETRELFESVKPTHVIHLAAMVGGLFHNLAHNLQFFRKNMAIND-----NVLAL- 94

Query: 353 VPSVRVFDFVFKCIFGMSIIIF 288
                 FD V KC+  +S  IF
Sbjct: 95  ---CHEFD-VIKCVSCLSTCIF 112


>AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
           protein.
          Length = 315

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 25/82 (30%), Positives = 39/82 (47%)
 Frame = -3

Query: 533 DGSTVVQARMLCRSSVLDDCVETIVLVGGVFHNTDRSISFMQRVVALHDITVASLVLALQ 354
           D   + + R L  S      +    +VGG+FHN   ++ F ++ +A++D      VLAL 
Sbjct: 41  DLENLEETRELFESVKPTHVIHLAAMVGGLFHNLAHNLQFFRKNMAIND-----NVLAL- 94

Query: 353 VPSVRVFDFVFKCIFGMSIIIF 288
                 FD V KC+  +S  IF
Sbjct: 95  ---CHEFD-VIKCVSCLSTCIF 112


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 351 DLKSQHETRDGDVVKGYYSLHEAD--GSIRVVEYSADKHNGFNAVVKHTAPTKHASLYNS 524
           DL +  E +D   V      ++ D   S+  ++  +D  N    V +  AP+K A   N 
Sbjct: 117 DLSTPQELQDVGRVARQEQTYDVDTPSSVESLDIPSDTSNNAGRVARQVAPSKSADYLNH 176

Query: 525 TTII 536
           TT+I
Sbjct: 177 TTLI 180


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 136 HDVTHGHGNEGQSYHVVPVAAHHGAPTIHAAPVLVHHH 249
           H   H HG+ G+ +H      HHG    H      HHH
Sbjct: 498 HSPAH-HGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHH 534



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +1

Query: 124 SIIRHDVTHGHGNEGQSYHVVPVAAHHGAPTIHAAPVLVH--HHEQRQ 261
           S+  H    GHG    ++H      HHGA   H A    H  HH+ ++
Sbjct: 663 SLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKE 710



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 136 HDVTHGHGNEGQSYHVVPVAAHHGAPTIHAAPVLVHHH 249
           H  +HGHG+   ++H      HH AP  H      HHH
Sbjct: 441 HHESHGHGHHSPAHH-GHHGEHHHAPAHHGHHG-EHHH 476



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +1

Query: 136 HDVTHGHGNEGQSYHVVPVAAHHGAPTIHAAPVLVHHH 249
           H V H H  E    H  P  AHHG    H      HHH
Sbjct: 399 HGVHHRHHGEHHGTHHSP--AHHGEHGTHHGHHGEHHH 434



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/81 (22%), Positives = 28/81 (34%)
 Frame = +3

Query: 255 APVHHGDQPQYEDYDAHPKYAFEYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIR 434
           +P HHG   ++    AH  +   +     H G  +S           G++  H       
Sbjct: 557 SPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHH 616

Query: 435 VVEYSADKHNGFNAVVKHTAP 497
              Y A  H+G +    H AP
Sbjct: 617 GAGYGA--HHGHHGAHHHHAP 635


>AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine
           receptor, class z protein63 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 192 YWYNMVGLTFIPMTMSHIV 136
           Y+Y MV +TFIP  ++HI+
Sbjct: 52  YFYKMVKITFIPSLLTHII 70


>Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical
           protein F57G9.1 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 538 LMMVVLLYRLACFVGAVCLTTALKP 464
           L+ VVL+Y + CF+G V LT  L P
Sbjct: 253 LVAVVLVYIMVCFLGIVSLTFDLIP 277


>AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 131 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 353 VPSVRVFDFVFKCIFGMSIIIFILRLVSMMYWR 255
           + +V +F F+F C+FG S  + I  L +  ++R
Sbjct: 80  IRNVPIFGFLFTCLFGSSFGLCISLLSTQFFYR 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,615,638
Number of Sequences: 27780
Number of extensions: 333343
Number of successful extensions: 943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)