Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30645
(700 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor prot... 23 3.7
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 22 4.9
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 22 4.9
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 22 4.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 21 8.5
>AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor
protein.
Length = 72
Score = 22.6 bits (46), Expect = 3.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 487 CLTTALKPLCLSAEY 443
CLT ++P C+ EY
Sbjct: 44 CLTVGMRPECMVPEY 58
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 217 IHAAPVLVHHHEQRQ 261
IH VLVHH E +
Sbjct: 664 IHVKEVLVHHREMEE 678
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 217 IHAAPVLVHHHEQRQ 261
IH VLVHH E +
Sbjct: 664 IHVKEVLVHHREMEE 678
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 22.2 bits (45), Expect = 4.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 487 CLTTALKPLCLSAEY 443
CLT ++P C+ EY
Sbjct: 247 CLTVGMRPECVVPEY 261
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 232 VLVHHHEQRQYIMETSLNMKIMMLIP-NMHLNTKSKTLTLGT*RANTRLATVM 387
++ HH +Y+M + + M + +P + ++ K +T T R A M
Sbjct: 279 LIFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGM 331
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 232 VLVHHHEQRQYIMETSLNMKIMMLIP-NMHLNTKSKTLTLGT*RANTRLATVM 387
++ HH +Y+M + + M + +P + ++ K +T T R A M
Sbjct: 279 LIFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGM 331
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 232 VLVHHHEQRQYIMETSLNMKIMMLIP-NMHLNTKSKTLTLGT*RANTRLATVM 387
++ HH +Y+M + + M + +P + ++ K +T T R A M
Sbjct: 279 LIFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGM 331
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 232 VLVHHHEQRQYIMETSLNMKIMMLIP-NMHLNTKSKTLTLGT*RANTRLATVM 387
++ HH +Y+M + + M + +P + ++ K +T T R A M
Sbjct: 279 LIFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGM 331
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 232 VLVHHHEQRQYIMETSLNMKIMMLIP-NMHLNTKSKTLTLGT*RANTRLATVM 387
++ HH +Y+M + + M + +P + ++ K +T T R A M
Sbjct: 279 LIFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGM 331
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 232 VLVHHHEQRQYIMETSLNMKIMMLIP-NMHLNTKSKTLTLGT*RANTRLATVM 387
++ HH +Y+M + + M + +P + ++ K +T T R A M
Sbjct: 279 LIFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGM 331
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 21.4 bits (43), Expect = 8.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = -1
Query: 214 SELHDALLLVQHGRIDLHSHDHES 143
S+LH + + HG +++H S
Sbjct: 79 SDLHALVEFIYHGEVNVHQRSLSS 102
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,174
Number of Sequences: 438
Number of extensions: 4117
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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