Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30645
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14070.1 68417.m02172 AMP-binding protein, putative similar t...    29   3.0  
At3g59640.1 68416.m06654 glycine-rich protein                          27   9.0  
At1g23630.1 68414.m02978 expressed protein contains Pfam profile...    27   9.0  

>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
           AMP-binding protein [gi:1617272] from Brassica napus;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA acyl-CoA synthetase-like protein
           GI:20799730
          Length = 727

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +3

Query: 303 HPKYAFEYKIEDPHTGDL-----KSQHETRDGDVVKGYY 404
           HP +  E+KI DP T ++     K   + R   V+KGYY
Sbjct: 520 HPMHGTEFKIVDPETNNVLPPGSKGIIKVRGPQVMKGYY 558


>At3g59640.1 68416.m06654 glycine-rich protein
          Length = 246

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 579 PNLHHECRKGDEGPVISVVGLKQRFNQNFSLN 674
           P  +H CR   +GPV+ ++G K + N +  L+
Sbjct: 59  PLQNHRCRNQRQGPVVCLLGGKDKSNGSNELS 90


>At1g23630.1 68414.m02978 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220; expression
           supported by MPSS
          Length = 264

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 330 IEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIRVVEYSADKHNGFNAVVKHTAPTK 503
           +E+PH  + KS        V   YY L E     R+   +  KH  ++A  K    TK
Sbjct: 15  VEEPHEVESKSPASNSVWAVDPKYYDLAEVKKESRLWRAAEKKHPWYDAPAKVKVTTK 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,794,450
Number of Sequences: 28952
Number of extensions: 311124
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)