Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30642
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   2.2  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    27   3.0  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.8  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   9.0  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   9.0  
SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    25   9.0  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 564  IVLCVCCRARAVRSSIRYICQ--QSDSIS 484
            I+ CVCCR   +  S  Y+ Q  QSDS++
Sbjct: 933  ILQCVCCRFNLIIGSEYYVPQSHQSDSVN 961


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 304 FYFL*MIKFGQLPNNAEAVKP 242
           +YF+    F QLP+N+E +KP
Sbjct: 350 YYFVTFRSFNQLPSNSEYLKP 370


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +2

Query: 386 FIYLYIYTHAYIRSFLIFIVYPISHALARV 475
           F+YLY+    +I  FL+++++  + ++A +
Sbjct: 196 FLYLYVLFTYFISIFLLYVLFSSTKSIADI 225


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 331 LTEG-SLTCV--VLCVICKYFIYLFIYIYACIHSIVLNFY 441
           LT G  L C   ++   C Y +++ I +Y C+    L FY
Sbjct: 328 LTRGVRLLCTEPIVQAFCMYLVFINILLYICMVGYPLIFY 367


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 136 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 35
           L G+P ++G++  P    EG++    G    EN+
Sbjct: 292 LYGVPSMYGVVTLPYSVREGINIFLDGHIPTENL 325


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 272 TSQQRRGREATACRSEDLTKSFNR 201
           +S  RRGR++ A    D++KSF R
Sbjct: 490 SSATRRGRKSIAGSLSDISKSFGR 513


>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 563 IRALQNTITDTEITVLFCVCGVC 631
           +++L N + +TEIT    VCG C
Sbjct: 84  LKSLHNVLLETEITEGKMVCGNC 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,357
Number of Sequences: 5004
Number of extensions: 51621
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)