Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30642
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0678 - 31114259-31114321,31114508-31114552,31114644-311147... 29 2.3
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 29 3.0
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106... 29 4.0
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 29 4.0
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 29 4.0
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 29 4.0
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 28 5.3
02_05_0805 - 31859201-31860151 28 5.3
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254... 27 9.3
04_04_1527 - 34167673-34168245 27 9.3
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 27 9.3
>01_06_0678 -
31114259-31114321,31114508-31114552,31114644-31114742,
31114827-31114872,31115026-31115102,31115385-31115432,
31120640-31120708,31120848-31120853,31120955-31121032,
31121246-31121344,31121427-31121489,31122642-31122713,
31122800-31122874,31122965-31123021,31123983-31124186,
31124317-31124394,31124485-31124547,31124646-31125284,
31125367-31125416,31125496-31125576,31125896-31125923
Length = 679
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 178 VHTARRYYRLNDLVRSSDRHAVASRPRRCWEVD 276
V +RY L DL+ ++R VA R WE D
Sbjct: 557 VELEKRYRELTDLLMEAERSRVARRSASAWEED 589
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 58 PGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSD 231
PG L + R G+ GL + I +E +S +HK + SL H Y + +L +D
Sbjct: 284 PGQRLIIARGGEGGLGNACILKEMWLSKAHKEEEMASLSTGHPGTETYLILELKSIAD 341
>10_01_0085 +
1061962-1062141,1062283-1062431,1062734-1062819,
1062986-1063113,1063213-1063341,1063428-1063495,
1063575-1063812
Length = 325
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 49 PRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSS 228
P G PL+LL GDWG + N+ + K+A T + FV + + N L
Sbjct: 31 PVAAGAPLRLLVVGDWG-RKGGYNQTRVAEQMGKVAEETEIDFVVSTGDNFLENGLAGVD 89
Query: 229 D 231
D
Sbjct: 90 D 90
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 57 PGQPAETPSCWGLGFAIIPHKRGIPSKRES*ARVDYVPALCTHRPSLLP--IE*FSEV 224
PG+P +TP W + + +P + +P+KR VD T R ++ I+ F EV
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKRGFTQFVDVGNVTATGRRNITGYCIDVFDEV 500
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 268 PNNAEAVKPPRVGPKTSLNHSIGSSDGRCVQ 176
PN ++PP +TS SIGSS+G Q
Sbjct: 302 PNGTRTIEPPPQMQRTSTASSIGSSEGTSEQ 332
>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 124 PRLWGIIANPNPQHEGVSAGCPGL*ARENML 32
P LW +++ P P+++ + G PG R +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140
>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 28.3 bits (60), Expect = 5.3
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = +1
Query: 37 CSPWPRGPGNPLKLLRAGDWGLQLSPINE--EFLVSASHKLALITSLPFVHTARRYYRLN 210
CS P + L+ G G Q SP N F H ++PF + ++ LN
Sbjct: 795 CSNGVPEPSVNVPSLKEGSSG-QCSPSNHTIRFAADRIHTQQNSGAIPFDNMQQK--GLN 851
Query: 211 DLVRSSDRHAVASRPRRCWEVDQT*SFRGSKSRNKVSVGNLTEGSLTC 354
L H AS RR +E +F GS +R K S+G T +L C
Sbjct: 852 KL----SGHDEASSARRAFE-----AFLGSLTRTKESIGRATRLALEC 890
>02_05_0805 - 31859201-31860151
Length = 316
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 286 IKFGQLPNNAEAVKPPRVGPKTSLNHSIGSSDGRCVQRAGT*STRA 149
+K QLP A KP + G L S +G C+ R GT ++ A
Sbjct: 135 LKLSQLPALAARAKPKKGGIALVLTAQDVSVEGFCMSRCGTHASNA 180
>09_06_0111 -
20924838-20924969,20925147-20925290,20925391-20925453,
20925993-20926116,20926779-20927005,20927088-20927255,
20927348-20927498,20927567-20927889
Length = 443
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 298 FL*MIKFGQLPNNAEAVKPPRVGPKTSLNHSIGSS 194
FL + F Q+P A VG KT +NH +G +
Sbjct: 198 FLRGVNFIQIPTTLMAQVDSSVGGKTGINHPLGKN 232
>04_04_1527 - 34167673-34168245
Length = 190
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 271 LPNNAEAVKPPRVGPKTSLNHSIGSSDG 188
LP A A PP GP S + ++ SS G
Sbjct: 85 LPGKAAAAAPPVAGPACSASSTVESSSG 112
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 98 PQSPARRSFSGLPGPLGQGEHADSFSVARVRP 3
PQ P F GLP +G +H D ++A P
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHP 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,865,165
Number of Sequences: 37544
Number of extensions: 342181
Number of successful extensions: 868
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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