Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30642
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    29   2.5  
At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc...    27   7.8  

>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 110 DNCKPQSPARRSFSGLPGPLGQGEHADS 27
           D+C   SP+RR   G+  PL  G  +DS
Sbjct: 415 DSCMSSSPSRRVIRGIDDPLLNGSFSDS 442


>At3g13784.1 68416.m01741 beta-fructosidase, putative /
           beta-fructofuranosidase, putative / cell wall invertase,
           putative similar to beta-fructofuranosidase GI:402740
           from [Arabidopsis thaliana]
          Length = 569

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 9   HARYTEGISMFSL--A*RPGQPAETPSCWGLGFAIIPHKRGI 128
           HA  T+ I+  +L  A RP +P++   CW     I+P+ + +
Sbjct: 87  HATSTDLINWITLSPAIRPSRPSDINGCWSGSVTILPNGKPV 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,379,782
Number of Sequences: 28952
Number of extensions: 267306
Number of successful extensions: 649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)