Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30641
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    113   1e-25
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   113   1e-25
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323...    28   5.0  
09_02_0167 + 5221910-5222516,5222826-5224642                           27   8.7  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   8.7  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  113 bits (271), Expect = 1e-25
 Identities = 53/86 (61%), Positives = 65/86 (75%)
 Frame = +2

Query: 254 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDEL 433
           TKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KDEL
Sbjct: 84  TKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDEL 143

Query: 434 IIEGNSLEDVSSSAALIQQSTTVKNR 511
           +++GN +E VS SAALI Q   VKN+
Sbjct: 144 VLDGNDIELVSRSAALINQKCHVKNK 169



 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 43/85 (50%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
 Frame = +3

Query: 9   MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 185
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 186 GSKKELAAVRTVCSHVENMIKGVLK 260
           G+++ +AA+RT  SHV+N+I GV K
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTK 85



 Score = 34.3 bits (75), Expect = 0.075
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 511 DIRKFLDGLYVSEKTTVVLD 570
           DIRKFLDG+YVS+K T+  D
Sbjct: 170 DIRKFLDGIYVSDKGTITED 189


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  113 bits (271), Expect = 1e-25
 Identities = 53/86 (61%), Positives = 65/86 (75%)
 Frame = +2

Query: 254 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDEL 433
           TKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KDEL
Sbjct: 77  TKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDEL 136

Query: 434 IIEGNSLEDVSSSAALIQQSTTVKNR 511
           +++GN +E VS SAALI Q   VKN+
Sbjct: 137 VLDGNDIELVSRSAALINQKCHVKNK 162



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 40/78 (51%), Positives = 60/78 (76%), Gaps = 3/78 (3%)
 Frame = +3

Query: 36  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV---NPRLLKVEKWFGSKKELA 206
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 207 AVRTVCSHVENMIKGVLK 260
           A+RT  SHV+N+I GV K
Sbjct: 61  AIRTAISHVQNLITGVTK 78



 Score = 34.3 bits (75), Expect = 0.075
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 511 DIRKFLDGLYVSEKTTVVLD 570
           DIRKFLDG+YVS+K T+  D
Sbjct: 163 DIRKFLDGIYVSDKGTITED 182


>02_01_0451 -
           3237849-3238061,3238142-3238268,3238418-3238656,
           3238937-3239151,3239569-3240031,3240562-3240715,
           3241724-3241833,3242540-3242797,3242843-3242854,
           3243492-3243545,3244202-3244312,3244390-3244545,
           3244798-3245201,3245405-3245501,3246041-3246050,
           3246097-3246164,3246652-3246762,3246874-3247074,
           3247384-3247485,3247980-3248087,3248209-3248411,
           3248563-3248680,3248774-3248854,3248958-3249500,
           3249602-3249730
          Length = 1428

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 464 SSSAALIQQSTTVKNRISESSWMVFM--YLRKQLL 562
           SSSAA +QQST+   R   S WM  +   L+K L+
Sbjct: 690 SSSAAAVQQSTSGPRRSESSFWMPLINNLLKKSLV 724


>09_02_0167 + 5221910-5222516,5222826-5224642
          Length = 807

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 159 RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVLKASNTRCVLCML--TSPLTVSPLRVIQ 332
           +L  ++ WF    EL     + + +  M+  V+   N R   C L    P  V  L+ +Q
Sbjct: 523 KLQMLDLWFTGVVELPREIKLLTEIRYMVATVMSEDNHRIFNCFLPVRFPCEVCHLKDLQ 582

Query: 333 LLRYV 347
           +L Y+
Sbjct: 583 VLGYI 587


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 105 VLKRNF-KHLAVDIRMVNPRLLKVE 176
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,105,897
Number of Sequences: 37544
Number of extensions: 331480
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)