Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30641
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   109   2e-24
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC084159-13|AAK39352.1|  197|Caenorhabditis elegans F-box a prot...    28   5.9  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  109 bits (261), Expect = 2e-24
 Identities = 50/86 (58%), Positives = 63/86 (73%)
 Frame = +2

Query: 254 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDEL 433
           T GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  GV    S  QKDE+
Sbjct: 83  TVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEI 142

Query: 434 IIEGNSLEDVSSSAALIQQSTTVKNR 511
           ++EGN ++ VS +AA IQQST VK +
Sbjct: 143 VVEGNDVQFVSQAAARIQQSTAVKEK 168



 Score =  101 bits (242), Expect = 4e-22
 Identities = 43/82 (52%), Positives = 62/82 (75%)
 Frame = +3

Query: 9   MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 188
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 189 SKKELAAVRTVCSHVENMIKGV 254
            +KELAA+RTVCSH++NMIKGV
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGV 82



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +1

Query: 502 QE*DIRKFLDGLYVSEKTTVVLDD 573
           +E DIRKFLDG+YVSEKTT+V  D
Sbjct: 166 KEKDIRKFLDGIYVSEKTTIVPTD 189


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -2

Query: 262 AFSTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 122
           + + P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 274 SLTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical
           protein T08E11.1 protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 286 HSTHLVLEAFSTPLIMFSTCEQTVLTAAS-SFLDPNHFSTFRRRGFTMRMSTAKCLKF 116
           ++TH+ LE  S P   FS CE   + A+  S  D         +G ++R    +C  F
Sbjct: 182 NATHIKLEGVSVPFDNFSHCEDVRIHASKVSANDIQTLVEIAYKGSSLRFFYVRCDSF 239


>AC084159-13|AAK39352.1|  197|Caenorhabditis elegans F-box a protein
           protein 16 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 537 KTIQELSDILFLTVVDC*MRAAELETS--SKELPSMISSSFCFGELTTVTP 391
           K I   S+ L L  VD  +R+  ++ S  S E   +     CF ELT++ P
Sbjct: 30  KAIDNTSENLLLDGVDREIRSRRVQASLSSLETREIYLGGICFNELTSILP 80


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 391 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 257
           RC L   ++F +  +T LNN + + GD +++  +   S   VL  F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 137 NSQVFEVPFENSAGPFNCHQTRFHMDR 57
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 137 NSQVFEVPFENSAGPFNCHQTRFHMDR 57
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 254  TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 388
            +  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1086 SSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,113,346
Number of Sequences: 27780
Number of extensions: 298903
Number of successful extensions: 725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)