Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30640
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 213 3e-56
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 206 2e-54
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 195 7e-51
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 186 2e-48
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 152 6e-38
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 79 7e-16
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 66 4e-12
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 41 2e-04
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 29 0.55
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 29 0.96
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.96
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 27 2.9
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 3.9
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr... 26 5.1
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 5.1
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 26 5.1
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 26 6.7
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 6.7
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 8.9
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 213 bits (519), Expect = 3e-56
Identities = 121/210 (57%), Positives = 144/210 (68%), Gaps = 5/210 (2%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 255 TQYSMPNVSSDVSSKMLLCKPT*STGLSRYPVMEANLRSR*HIRV----KTKTFFPEEVS 422
T + + + K P + + +P + + ++V +TKTF PEE+S
Sbjct: 64 TIFDAKRL---IGRK--FDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEIS 118
Query: 423 SMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAAA 602
SMVL KM+ETAEAYLG V +AV+TVPAY + + K GLNVLRIINEPTAAA
Sbjct: 119 SMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAA 178
Query: 603 IAYGLDKKGTGERNVLIFGPRRRYFDVSIL 692
IAYGLD+ GE NVLIF FDVS+L
Sbjct: 179 IAYGLDRSNQGESNVLIFDLGGGTFDVSLL 208
Score = 109 bits (261), Expect = 6e-25
Identities = 70/170 (41%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVSSDGGKPKIKVAYKGEDKNLFPRGSQFH 427
P +TIFDAKRLIGRKF+D VQ+DMKHWPF+V S GKP ++V YKGE K P
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLE--RSPNHQ*TDCCC 601
+ + + FNDSQRQATKDAG I+GL R N
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIA 180
Query: 602 DCLRS*QKGYWRTKCTYLWTSAAVLRRVHP*PSRMGIFEVKSTAGDTHFG 751
L +G ++ V GIFEVK+TAGDTH G
Sbjct: 181 YGLDRSNQG---ESNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLG 227
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 649 LSLDLGGGTSTCPSLTIEDG 708
L DLGGGT LTIE+G
Sbjct: 194 LIFDLGGGTFDVSLLTIEEG 213
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 206 bits (504), Expect = 2e-54
Identities = 119/210 (56%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 255 TQYSMPNVSSDVSSKMLLCKPT*STGLSRYP--VMEANLRSR*HIRVK--TKTFFPEEVS 422
T + + P + + +P V+E + + + K TKTF PEE+S
Sbjct: 64 TIFDAKRLIG-----RRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEIS 118
Query: 423 SMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAAA 602
SMVL KM+E+AEA+LG V +AV+TVPAY + + K GLNVLRIINEPTAAA
Sbjct: 119 SMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAA 178
Query: 603 IAYGLDKKGTGERNVLIFGPRRRYFDVSIL 692
IAYGLD+ E NVLIF FDVS+L
Sbjct: 179 IAYGLDRSNQHETNVLIFDLGGGTFDVSLL 208
Score = 104 bits (249), Expect = 2e-23
Identities = 65/168 (38%), Positives = 78/168 (46%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVSSDGGKPKIKVAYKGEDKNLFPRGSQFH 427
P +TIFDAKRLIGR+F D VQ+DMKHWPF+V GKP I+V +KGE K P
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLERSPNHQ*TDCCCDC 607
+ + + + FNDSQRQATKDAG I+GL
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIA 180
Query: 608 LRS*QKGYWRTKCTYLWTSAAVLRRVHP*PSRMGIFEVKSTAGDTHFG 751
+ T V GIFEVK+TAGDTH G
Sbjct: 181 YGLDRSNQHETNVLIFDLGGGTFD-VSLLTIEEGIFEVKATAGDTHLG 227
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 649 LSLDLGGGTSTCPSLTIEDG 708
L DLGGGT LTIE+G
Sbjct: 194 LIFDLGGGTFDVSLLTIEEG 213
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 195 bits (475), Expect = 7e-51
Identities = 106/210 (50%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-NT 257
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 258 QYSMPNVSSDVSSKMLLCKPT*STGLSRYPVMEANLRSR*HIRV----KTKTFFPEEVSS 425
+ + + + + K + +P N ++R + V K K F PEE+S+
Sbjct: 98 IFDIKRLIGRKFDEKTMAKD-----IKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISA 152
Query: 426 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAAAI 605
M+L+KMK+TAEAYLGK V +AV+TVPAY + + K GLNV+RI+NEPTAAAI
Sbjct: 153 MILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAI 212
Query: 606 AYGLDKKGTGERNVLIFGPRRRYFDVSILN 695
AYGLDK T E++++++ FDVS+L+
Sbjct: 213 AYGLDKTDT-EKHIVVYDLGGGTFDVSLLS 241
Score = 77.8 bits (183), Expect = 2e-15
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 2/170 (1%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVSSDGGKPKIKVAYKGEDKNLFPRGSQFH 427
P++TIFD KRLIGRKF++ T+ D+K +PF + +D +P ++V G+ K P
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLE--RSPNHQ*TDCCC 601
+ + + + FND+QRQATKDAGTI+GL R N
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIA 213
Query: 602 DCLRS*QKGYWRTKCTYLWTSAAVLRRVHP*PSRMGIFEVKSTAGDTHFG 751
L K ++ V G+FEV +T+GDTH G
Sbjct: 214 YGLDKTDT----EKHIVVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLG 259
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 186 bits (454), Expect = 2e-48
Identities = 112/217 (51%), Positives = 134/217 (61%), Gaps = 6/217 (2%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 255 TQYSMPNV-----SSDVSSKMLLCKPT*STGLSRYPVMEANLRSR*HIRVKTKTFFPEEV 419
T + + + K + P + P +E N + K F +E+
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLG------EKKQFTAQEI 121
Query: 420 SSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 599
S+MVLTKMKE +EA L K V+ AVITVPAY + K GLNVLRIINEPTAA
Sbjct: 122 SAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAA 181
Query: 600 AIAYGLDKKGTGERNVLIFGPRRRYFDVSILNHRGWV 710
AIAYGLD K +NVLIF FDVS+L +G V
Sbjct: 182 AIAYGLDAKSDKPKNVLIFDLGGGTFDVSLLKIQGGV 218
Score = 86.2 bits (204), Expect = 5e-18
Identities = 59/170 (34%), Positives = 83/170 (48%), Gaps = 2/170 (1%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVSSDGGKPKIKVAYKGEDKNLFPRGSQFH 427
P++T+FDAKRLIGR++ED Q D+KHWPF+V + G P I+V Y GE K +
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLE--RSPNHQ*TDCCC 601
+ + + + + F+DSQR ATKDAG I+GL R N
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIA 184
Query: 602 DCLRS*QKGYWRTKCTYLWTSAAVLRRVHP*PSRMGIFEVKSTAGDTHFG 751
L + + K ++ V + G+FEV +TAGDTH G
Sbjct: 185 YGLDAKSD---KPKNVLIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLG 231
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 152 bits (368), Expect = 6e-38
Identities = 88/210 (41%), Positives = 125/210 (59%), Gaps = 2/210 (0%)
Frame = +3
Query: 69 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 245
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 246 NP-NTQYSMPNVSSDVSSKMLLCKPT*STGLSRYPVMEANLRSR*HIRVKTKTFFPEEVS 422
NP NT ++ + + + + Y ++E + + + KT+ P ++
Sbjct: 109 NPENTFFATKRL---IGRRFKEPEVQRDIKEVPYKIVEHSNGDA-WLEARGKTYSPSQIG 164
Query: 423 SMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAAA 602
+L+KM+ETA YLGK V+NAV+TVPAY + + K GLNVLR++NEPTAAA
Sbjct: 165 GFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAA 224
Query: 603 IAYGLDKKGTGERNVLIFGPRRRYFDVSIL 692
+AYGLDKK + V +F FD+SIL
Sbjct: 225 LAYGLDKK--NDAIVAVFDLGGGTFDISIL 252
Score = 49.2 bits (112), Expect = 6e-07
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVSSDGGKPKIKVAYKGEDKNLFPRGSQFH 427
P++T F KRLIGR+F++ VQ D+K P+++ + K P SQ
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNG---DAWLEARGKTYSP--SQIG 164
Query: 428 GAYENEGNCRSLSW--QNCAECSYHGSRVFNDSQRQATKDAGTISGL 562
G ++ + ++ ++ FNDSQRQATK AG I+GL
Sbjct: 165 GFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGL 211
Score = 29.9 bits (64), Expect = 0.41
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 707 GIFEVKSTAGDTHFG 751
G+FEV+ST GDTH G
Sbjct: 257 GVFEVRSTNGDTHLG 271
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 79.0 bits (186), Expect = 7e-16
Identities = 52/188 (27%), Positives = 99/188 (52%), Gaps = 2/188 (1%)
Frame = +3
Query: 66 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 245
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 246 N-PNTQYSMPNVSSDVSSKMLLCKPT*STGLS-RYPVMEANLRSR*HIRVKTKTFFPEEV 419
N NT S+ ++ + K S +S + ++ + ++ + F ++
Sbjct: 63 NFRNTVGSLKRLAGRTYDDPEI-KDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQL 121
Query: 420 SSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 599
+ TK+K AEA L +V + VI++PA+ ++ + GLN LR++N+ AA
Sbjct: 122 IAAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAA 181
Query: 600 AIAYGLDK 623
A+ YG+ K
Sbjct: 182 ALTYGITK 189
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 66.5 bits (155), Expect = 4e-12
Identities = 51/214 (23%), Positives = 101/214 (47%), Gaps = 6/214 (2%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-NT 257
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 258 QYSMPNVSSDVSSKMLL--CKPT*S-TGLSRYPVMEANLRSR*HIRVKTKTFFPEEVSSM 428
+ ++ ++ L C + + + + ++ K K E S
Sbjct: 87 VTNFRDLLGKSHDELTLHHCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEASVR 146
Query: 429 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAAAIA 608
L ++ E+AE +LG V V++VP Y + K + GL VL++I++P A +A
Sbjct: 147 HLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPAAVILA 206
Query: 609 YGLDKKGTGERNVLI--FGPRRRYFDVSILNHRG 704
++ ++ V++ FG R +VS+++ +G
Sbjct: 207 LMYSEEVLIDKTVVVANFGATRS--EVSVVSVKG 238
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 40.7 bits (91), Expect = 2e-04
Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 5/186 (2%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNT 257
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFP-- 82
Query: 258 QYSMPNVSSDVSS----KMLLCKPT*STGLSRYPVMEANLRSR*HIRVKTKTFFPEEVSS 425
+S+ NV + + +L+ K S + E + + + EE+ +
Sbjct: 83 AHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIA 142
Query: 426 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAAAI 605
M + AE + + + V+TVP + L+ L +VL +I++ A AI
Sbjct: 143 MTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDNVAVAI 202
Query: 606 AYGLDK 623
Y L +
Sbjct: 203 EYSLSR 208
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 29.5 bits (63), Expect = 0.55
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +3
Query: 411 EEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEP 590
E + + L ++++T E Q ++ V YS+ KD + + +L L L + NE
Sbjct: 490 ERIIILSLIELRKTIEENKDVDYQ-IILPVVLYSLQSKDTEVRSRALNLILTFLELRNEN 548
Query: 591 TAAAIAYGLD 620
+I YG+D
Sbjct: 549 LEFSIIYGMD 558
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 28.7 bits (61), Expect = 0.96
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 692 KDGHVEVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQAQ 555
K+G +EVPP S + +S F++ + +++ DS +VQ Q
Sbjct: 316 KNGSMEVPPKVSVGDSVLTTSQKFLQVIREKTALLMNQDSNSVQPQ 361
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.96
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 73 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 168
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 VHP*PSRMGIFEVKSTAGDTHFG 751
V P PS MG+ + +S+A D H+G
Sbjct: 537 VFPLPSCMGLIDSESSAFDVHYG 559
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 177 PSYVAFTDTERLIGDAAKNQVAMNPNTQYSMPNVSSDVSSKMLLC 311
P +A T ER++ AAK A+N Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -2
Query: 419 DFLGEKGFCLHPYMLP*S*VCLHHWIPRKASASCRLAQ*HLRTYVR*DVWHRILC 255
+FL KGFC+ P P + CL + + L + L YV D H I+C
Sbjct: 120 EFLENKGFCVLPD--PPTPSCLKYTLLYMPHCPTSLYETWLAAYVNDDPRHFIMC 172
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 668 PPRSKDKYISFSSTLFVKTVSNRSSS 591
P RS+DK+ SF STL V +S S++
Sbjct: 670 PRRSQDKFKSFHSTLEVIKISRFSNA 695
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 246 NPNTQYSMPNVSSDVSSKMLLCKPT*STGLSRYP 347
N NTQ+S+PN S V L +P G + P
Sbjct: 327 NLNTQFSLPNNSQPVFGHTSLTQPVNPNGFTVQP 360
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 432 LTKMKETAEAYLGKTVQNAVITVPAYSMTLK-DKPQKMQVPSLGLNVLRIINEP 590
LT M + A+ G+ V+ I Y +L D+ ++VPSLG+N L N P
Sbjct: 600 LTAMVQFAQKTEGE-VKKLFIKAKIYFESLSLDERGNLKVPSLGINGLEYDNWP 652
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 159 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 1
G W SP S + H ++++ +F +RVL C+ L K +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 222 AAKNQVAMNPNTQYSMPNVSSDVSSKML 305
A K Q+ +NP + +PNV D + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,519,865
Number of Sequences: 5004
Number of extensions: 79405
Number of successful extensions: 275
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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