Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30640
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 239 2e-63
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 227 8e-60
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 201 6e-52
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 6e-42
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 123 2e-28
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 67 2e-11
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 4e-04
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 1.0
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20) 30 1.8
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 1.8
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 1.8
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 3.1
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 5.5
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14) 29 5.5
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_38430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.5
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 239 bits (585), Expect = 2e-63
Identities = 135/215 (62%), Positives = 154/215 (71%), Gaps = 5/215 (2%)
Frame = +3
Query: 63 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 242
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 243 MNP-NTQYSMPNVSSDVSSKMLLCKPT*STGLSRYP--VMEANLRSR*HIRVK--TKTFF 407
MNP NT + + + K P + ++ +P V+ R + + K K+FF
Sbjct: 61 MNPENTVFDAKRL---IGRK--FDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFF 115
Query: 408 PEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINE 587
PEE+SSMVLTKMKETAEAYLG V +AV+TVPAY + + K GLNVLRIINE
Sbjct: 116 PEEISSMVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINE 175
Query: 588 PTAAAIAYGLDKKGTGERNVLIFGPRRRYFDVSIL 692
PTAAAIAYGLDKK ERNVLI+ FDVS+L
Sbjct: 176 PTAAAIAYGLDKKVGVERNVLIYDLGGGTFDVSVL 210
Score = 109 bits (262), Expect = 2e-24
Identities = 70/170 (41%), Positives = 86/170 (50%), Gaps = 2/170 (1%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVSSDGGKPKIKVAYKGEDKNLFPRGSQFH 427
P++T+FDAKRLIGRKF+D V DM HWPF V +G +PKI+V +KGE K+ FP
Sbjct: 63 PENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSM 122
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLE--RSPNHQ*TDCCC 601
+ + + + F+DSQRQATKDAGTI+GL R N
Sbjct: 123 VLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 602 DCLRS*QKGYWRTKCTYLWTSAAVLRRVHP*PSRMGIFEVKSTAGDTHFG 751
L + G R Y V GIFEVKSTAGDTH G
Sbjct: 183 YGLDK-KVGVERNVLIYDLGGGTF--DVSVLTIEDGIFEVKSTAGDTHLG 229
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 227 bits (555), Expect = 8e-60
Identities = 126/213 (59%), Positives = 149/213 (69%), Gaps = 3/213 (1%)
Frame = +3
Query: 63 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 242
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 243 MNP-NTQYSMPNVSSDVSSKMLLCKPT*STGLSRYPVMEANLRSR*HIRVK--TKTFFPE 413
+NP NT + + + + L + ++ N + + + K KTF E
Sbjct: 61 LNPENTIFDAKRL---IGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAE 117
Query: 414 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPT 593
E+SSMVL KMKETAEAYLG+ V +AVITVPAY + + K GLNVLR+INEPT
Sbjct: 118 EISSMVLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPT 177
Query: 594 AAAIAYGLDKKGTGERNVLIFGPRRRYFDVSIL 692
AAA+AYGLDK +GE+NVLIF FDVSIL
Sbjct: 178 AAALAYGLDKSLSGEKNVLIFDLGGGTFDVSIL 210
Score = 108 bits (259), Expect = 6e-24
Identities = 72/171 (42%), Positives = 88/171 (51%), Gaps = 3/171 (1%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVSSDGGKPKIKVAYKGEDKNLFPRGSQFH 427
P++TIFDAKRLIGR+++DATVQ+DMK WPF++ SD KPKI+V YKGE K
Sbjct: 63 PENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSM 122
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLE--RSPNHQ*TDCCC 601
+ + + Q FNDSQRQATKDAGTI+GL R N
Sbjct: 123 VLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALA 182
Query: 602 DCLRS*QKGYWRTKCTYLWTSAAVLRRVHP*PSRMG-IFEVKSTAGDTHFG 751
L K K ++ V G +FEVKSTAGDTH G
Sbjct: 183 YGL---DKSLSGEKNVLIFDLGGGTFDVSILTIDDGSLFEVKSTAGDTHLG 230
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 201 bits (490), Expect = 6e-52
Identities = 114/210 (54%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNP-N 254
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ NP N
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPEN 763
Query: 255 TQYSMPNVSSDVSSKMLLCKPT*STGLSRYPVMEANLRSR*HIRVKTK----TFFPEEVS 422
T + + + L +P + + H++VK K TF EE+S
Sbjct: 764 TVFDAKRLIGRSWDDTSV-----QNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEIS 818
Query: 423 SMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAAA 602
+MVLTKMKETAEAYLGK V +AV+TVPAY + + K GL V+RIINEPTAAA
Sbjct: 819 AMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAA 878
Query: 603 IAYGLDKKGTGERNVLIFGPRRRYFDVSIL 692
IAYG+DKK GE+N+L+F FDVS+L
Sbjct: 879 IAYGMDKK-EGEKNILVFDLGGGTFDVSLL 907
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 167 bits (407), Expect = 6e-42
Identities = 100/174 (57%), Positives = 114/174 (65%), Gaps = 25/174 (14%)
Frame = +3
Query: 63 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 242
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 243 MNP-NT----------QYSMPNVSSDVS-------------SKMLLCKPT*STGLSRYPV 350
MNP NT ++ P V D+ + K T + V
Sbjct: 61 MNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVV 120
Query: 351 MEANL-RSR*HIRVKTKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAY 509
EA + + + +TKTFF EE+SSMVL KMKETAEAYLG V +AV+TVPAY
Sbjct: 121 NEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAY 174
Score = 107 bits (258), Expect = 7e-24
Identities = 60/94 (63%), Positives = 68/94 (72%)
Frame = +3
Query: 414 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPT 593
++SSMVL KMKETAEAYLG V +AV+TVPAY + + K GLNVLRIINEPT
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 594 AAAIAYGLDKKGTGERNVLIFGPRRRYFDVSILN 695
AAAIAYGLDKK ERNVLIF FDVS+L+
Sbjct: 271 AAAIAYGLDKKVGQERNVLIFDLGGGTFDVSVLS 304
Score = 71.3 bits (167), Expect = 8e-13
Identities = 49/127 (38%), Positives = 63/127 (49%), Gaps = 27/127 (21%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVSSDGGKPKIK------------------ 373
P +TIFDAKRLIGR+F+D V+ DMKHW FEV ++ G+PK+K
Sbjct: 63 PTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNE 122
Query: 374 -------VAYKGEDKNLFPRGSQFHGAYENEGNCRSLSWQNC--AECSYHGSRVFNDSQR 526
V YKGE K F + N+ + ++ C + FNDSQR
Sbjct: 123 AGRPKVKVEYKGETKTFF--AEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQR 180
Query: 527 QATKDAG 547
QATKDAG
Sbjct: 181 QATKDAG 187
Score = 44.8 bits (101), Expect = 8e-05
Identities = 35/83 (42%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 509 FNDSQRQATKDAGTISGLE--RSPNHQ*TDCCCDCLRS*QKGYWRTKCTYLWTSAAVLRR 682
FNDSQRQATKDAG ISGL R N L K + + ++
Sbjct: 243 FNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGL---DKKVGQERNVLIFDLGGGTFD 299
Query: 683 VHP*PSRMGIFEVKSTAGDTHFG 751
V GIFEVKST GDTH G
Sbjct: 300 VSVLSIEDGIFEVKSTHGDTHLG 322
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 123 bits (296), Expect = 2e-28
Identities = 83/219 (37%), Positives = 120/219 (54%), Gaps = 7/219 (3%)
Frame = +3
Query: 69 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 242
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 243 MNP-NTQYSMPNVSSDVSSKMLLCKPT*STGLSRYPVMEANLRSR*HIRVKTKTFF---P 410
+NP NT Y +K L + L ++ V + + K F P
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLE---IGKLYQFRVTTDKRGNAGFLVGKKGNFTVITP 146
Query: 411 EEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSL-GLNVLRIINE 587
EE+ V+ K++ AE L TV AV++VPA +K + ++ SL G+ VLR+INE
Sbjct: 147 EEIGGYVIKKLRTMAERNLTTTVTKAVMSVPA-EFDIKQRNATVKAASLAGITVLRVINE 205
Query: 588 PTAAAIAYGLDKKGTGERNVLIFGPRRRYFDVSILNHRG 704
PTAAA+AYGL KK G NV++ DVS+LN +G
Sbjct: 206 PTAAALAYGLHKK-EGVANVMVVDLGGGTLDVSLLNIQG 243
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVSSD-GGKPKIKVAYKG 388
P++TI+DAKR IG+ F + K + F V++D G V KG
Sbjct: 92 PKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKG 139
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 66.9 bits (156), Expect = 2e-11
Identities = 47/109 (43%), Positives = 63/109 (57%), Gaps = 26/109 (23%)
Frame = +3
Query: 396 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAY---------------------S 512
++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+ S
Sbjct: 11 RSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATKDAGTIAGLDVLS 70
Query: 513 MTLKDKPQ---KMQVPSLGLNVLRIINEPTAAAIAYGLDKK--GTGERN 644
T ++P + + P VLRIINEPTAAAIAYGLDK G ERN
Sbjct: 71 RTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDKARGGKAERN 119
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/79 (37%), Positives = 49/79 (62%)
Frame = +3
Query: 390 KTKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNV 569
K + F PE+V +M+ T++K TAE L V + VI+VP+Y + + + GLN
Sbjct: 167 KQEVFSPEQVMAMLFTRLKTTAEIALKTKVTDCVISVPSYYTDRQRRCMLDASATAGLNC 226
Query: 570 LRIINEPTAAAIAYGLDKK 626
LR++N+ TA ++AYG+ K+
Sbjct: 227 LRLMNDTTAVSLAYGIYKQ 245
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 236
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Frame = +2
Query: 251 QHTIFDAKRLIGRKFEDATVQADMKHWPFE-VSSDGGKPKIKVAYKGEDKNLFPRGSQFH 427
++TI KR IGRKF D VQ ++ H P++ V I+V Y G+ + P
Sbjct: 120 KNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAM 179
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGL 562
+ +C + D QR+ DA +GL
Sbjct: 180 LFTRLKTTAEIALKTKVTDCVISVPSYYTDRQRRCMLDASATAGL 224
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/73 (34%), Positives = 40/73 (54%)
Frame = +3
Query: 399 TFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRI 578
TF PEE+ M+L + E + +++ V+TVP + + + +GLNVL+I
Sbjct: 79 TFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFNQAERRALLRAAELVGLNVLQI 138
Query: 579 INEPTAAAIAYGL 617
+N TA A+ YGL
Sbjct: 139 MNSNTAVALNYGL 151
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 132 GKVEIIANDQGNRTTPSYVAFTDTERLI--GDAAKNQVAMNP-NTQYSMPNVSSDVSSKM 302
G IIAND G+R TP+ VAF+DTE+LI +V N N Q S V + + KM
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLIDKDGLPYYEVESNERNIQVSPKEVINMIYKKM 142
Query: 303 L 305
L
Sbjct: 143 L 143
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 141 EIIANDQGNRTTPSYVAFT-DTERL 212
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
Length = 1423
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 381 IRVKTKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAV-ITVPAYSMTLKDKPQKMQVP 551
I+ KT F EE + TK E + + + +YS LK KPQ Q+P
Sbjct: 716 IQPKTPVFVKEEFPDLSNTKQGENQSTLTSDWLSGGTRMPILSYSAALKTKPQPRQLP 773
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 640 RSPVPFLSRP*AIAAAVGSLMIRRTFKPRDGTCIFCGLSLRVIEYAGTVITAFCTVLPR* 461
R+PV F I AVG ++I F PR T I GL + AG V C +
Sbjct: 74 RTPVNFF----LINMAVGDVLITVFFMPRMVTRILVGLEWSLDGLAGLVTCKVCASMQEF 129
Query: 460 ASAVS-FIFVS 431
S++S +F+S
Sbjct: 130 CSSLSILVFIS 140
>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 1125
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 640 RSPVPFLSRP*AIAAAVGSLMIRRTFKPRDGTCIFCGLSLRVIEYAGTVITAFCTVLPR* 461
R+PV F I AVG ++I F PR T I GL + AG V C +
Sbjct: 817 RTPVNFF----LINMAVGDVLITVFFMPRMVTRILVGLEWSLDGLAGLVTCKVCASMQEF 872
Query: 460 ASAVS-FIFVS 431
S++S +F+S
Sbjct: 873 CSSLSILVFIS 883
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 249 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 151
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 9 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 95
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
Length = 856
Score = 28.7 bits (61), Expect = 5.5
Identities = 32/124 (25%), Positives = 51/124 (41%)
Frame = -3
Query: 451 VSFIFVSTMELTSSGKKVFVFTLICYLDLRFASITGYLERPVLHVGLHSSIFELTSDETF 272
V F+ ++T + T S +F T I F GYL ++ L S T +
Sbjct: 46 VFFLTLATTDFTISINILFTPTFI--FGESFPYPNGYLGGEIVCRLLWSRWLLYTLGIS- 102
Query: 271 GIEYCVLGFIATWFLAASPMRRSVSVNAT*DGVVLLPWSLAMISTFPCWKTPTQEYVVPR 92
+ C+L I WF P+R S + VV+ S+ ++ F C P + P
Sbjct: 103 SVFLCLLLTIERWFAVVQPLRYQASFSKR--RVVVSLISVYCVACFLCCTLPFEVSFSPE 160
Query: 91 SIPT 80
+IP+
Sbjct: 161 NIPS 164
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +2
Query: 50 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 226
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 227 QEPGGDEPQHTIFDA 271
G +P++T F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_38430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/76 (21%), Positives = 29/76 (38%)
Frame = -3
Query: 553 DGTCIFCGLSLRVIEYAGTVITAFCTVLPR*ASAVSFIFVSTMELTSSGKKVFVFTLICY 374
DG I S +IE T + FC +P + + M + + F+ +C+
Sbjct: 583 DGLAIGAAFSNSIIEGFSTSLAIFCEEVPHELGDFAVLLSGGMTVRQALGFNFLSACVCF 642
Query: 373 LDLRFASITGYLERPV 326
+ + + GY V
Sbjct: 643 VGMAIGLLLGYTTHAV 658
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 653 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 567
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,535,170
Number of Sequences: 59808
Number of extensions: 657108
Number of successful extensions: 2047
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2024
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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