Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30640
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.58 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 531 PQKMQVPSLGLNVLRIINEPTAAAIAYGLDKKGTGERNVLI 653
           P    +PS+   + R I++ +A ++A GL  +GT  R V +
Sbjct: 440 PTMPTMPSMAGPIRRRISDKSALSLAGGLYDEGTVRRRVAV 480


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/50 (24%), Positives = 19/50 (38%)
 Frame = +2

Query: 314  ADMKHWPFEVSSDGGKPKIKVAYKGEDKNLFPRGSQFHGAYENEGNCRSL 463
            +D K    + +S   +P   +A     K +   G        N+G C SL
Sbjct: 882  SDRKRPASQATSVKAEPGSIMAMSESSKKVLSPGELLSSCVSNDGGCSSL 931


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 66 PFCIFNQSCYLFLKQ 22
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,712
Number of Sequences: 438
Number of extensions: 6032
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)