Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30639
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    27   0.12 
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    27   0.12 
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    27   0.12 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.9  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 583 HLHGYFEERFSEFLRQRFPILIHKSSITSPNCLLPLNKFV 464
           HLH Y EE      R R  ++ + SS+  P  +LP  K++
Sbjct: 161 HLHRYKEEALQGDGRMRQHVMHNLSSVPQPQPVLPTYKWM 200


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 583 HLHGYFEERFSEFLRQRFPILIHKSSITSPNCLLPLNKFV 464
           HLH Y EE      R R  ++ + SS+  P  +LP  K++
Sbjct: 161 HLHRYKEEALQGDGRMRQHVMHNLSSVPQPQPVLPTYKWM 200


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 583 HLHGYFEERFSEFLRQRFPILIHKSSITSPNCLLPLNKFV 464
           HLH Y EE      R R  ++ + SS+  P  +LP  K++
Sbjct: 161 HLHRYKEEALQGDGRMRQHVMHNLSSVPQPQPVLPTYKWM 200


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 576 MGISRSGFPNSC 541
           MG+ R GF N C
Sbjct: 200 MGVHRPGFDNDC 211


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,371
Number of Sequences: 336
Number of extensions: 3571
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)