Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30639
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    28   1.6  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    27   3.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.9  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 183 ERYNH*QIERGFSKKTDTSYLSRQVYLKGKYKASGKLLILPITGDGDTTIKLKNLRIQ 356
           E YN   + + FS+K     L  +  L+  YK+ G     P +G+ DT     + RI+
Sbjct: 216 ETYNDPSVPKDFSRKAIHESLRTKNILQSPYKSVGIEEEFPSSGNNDTPGLTDSTRIE 273


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 321 DTTIKLKNLRIQMIYPFNLVKNSEGKDVIDLSSYRYSYDVKDNAHFHMTNL 473
           + T K   LRI+   P+ LVK  + K + DL S   + D K+  H    +L
Sbjct: 70  NATFKGSKLRIEEARPYYLVKLQQEKKIADLQS--TNNDEKNEDHSSKVDL 118


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 557  PLLEIPMEMVYNTVKTYLKSQPLEDIANL 643
            PLL + ME + + + T LKS P ED   L
Sbjct: 3130 PLLALTMETMVDQIHTRLKSFPEEDAYRL 3158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,971
Number of Sequences: 5004
Number of extensions: 61602
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)