Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30639
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0506 - 4224789-4225376,4225387-4225429,4225700-4225863           30   1.7  
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589     28   6.7  
10_08_0306 + 16652175-16652357,16652456-16652584                       28   8.9  

>05_01_0506 - 4224789-4225376,4225387-4225429,4225700-4225863
          Length = 264

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 282 SGKLLILPITGDGDTTIKLKNLRIQMIYPFNLVKNSEGKDVIDLSSY 422
           SG+    P TGDGDT   + +L +    PF L+ N +     DLSSY
Sbjct: 194 SGENCPAPGTGDGDTLGVVTSLEVSFEGPFPLISNLD-----DLSSY 235


>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
          Length = 503

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 103 DPLYVEAIKVDLAGLKLALTDAEITGMKDTIIDKLSV--DLAKKQIQVICHVRF 258
           DP +V+AI V  +G       A  T + D   D+L+V  D    Q+Q + H R+
Sbjct: 302 DPTWVQAIAVQFSGGHRLYVGARRTAVWDDDSDRLAVVFDGETVQLQRVAHARW 355


>10_08_0306 + 16652175-16652357,16652456-16652584
          Length = 103

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 245 QITCICFFAKSTLNLSMIVSFIPVISASVSA 153
           ++ CICF    T+ ++ + +   V+SA+V A
Sbjct: 66  ELCCICFDQACTIEVAAVTAIASVVSAAVGA 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,269,259
Number of Sequences: 37544
Number of extensions: 356135
Number of successful extensions: 645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)