Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30639
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44352| Best HMM Match : Toxin_28 (HMM E-Value=3.1)                  30   2.3  
SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_15075| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               29   3.9  
SB_29514| Best HMM Match : MotA_ExbB (HMM E-Value=0.21)                28   6.9  
SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25)                   28   9.1  

>SB_44352| Best HMM Match : Toxin_28 (HMM E-Value=3.1)
          Length = 250

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 258 YLKGKYKASGKLLILPITGDGDTTIKLKNLRI--QMIYPFNLVKNSEGKDVIDLSSYRY 428
           Y+K  +  +GKLL + I  DG   +   ++ I  Q      LV N+    V  LSS++Y
Sbjct: 36  YIKPNHDENGKLLSVAIHADGLPVVDFDHVIIATQANQAVKLVPNARADHVKTLSSFKY 94


>SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 258 YLKGKYKASGKLLILPITGDGDTTIKLKN--LRIQMIYPFNLVKNSEGKDVIDLSSYRY 428
           Y+K  +  +GKLL + I  DG   +   +  +  Q      LV N+    V  LSS++Y
Sbjct: 202 YIKPNHDENGKLLSVAIHADGLPVVDFDHVIMATQANQAVKLVPNARADHVKTLSSFKY 260


>SB_15075| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 541

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 26/99 (26%), Positives = 41/99 (41%)
 Frame = +3

Query: 171 DNWNERYNH*QIERGFSKKTDTSYLSRQVYLKGKYKASGKLLILPITGDGDTTIKLKNLR 350
           D  N+R     I +G   K    Y  +  Y+  KYK     +ILP T    T +++ +  
Sbjct: 326 DGDNQRIRVDIISKGVPYKIVQLYTEKVQYVMFKYKGKDMCIILPFT-KPFTPVEIPSTS 384

Query: 351 IQMIYPFNLVKNSEGKDVIDLSSYRYSYDVKDNAHFHMT 467
           +++ +   +     G DV      R  Y  KD  HF +T
Sbjct: 385 LELEHG-RIGSAKHGLDV------RRFYGTKDGVHFIVT 416


>SB_29514| Best HMM Match : MotA_ExbB (HMM E-Value=0.21)
          Length = 368

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 43  AQLMVPQLTDGLPDLGSKVLDPLYVE--AIKVDLAGLKLALTDAEITGMKDTIIDKL 207
           AQ+  P L DGLP   +K LDP  +E   + VD    +LA    E+    D   DK+
Sbjct: 54  AQVAKPMLVDGLP---NKQLDPRILEDLGMTVDEITAELAARREEVDKEIDRATDKM 107


>SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25)
          Length = 418

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 315 DGDTTIKLKNLRIQMIYPFNLVKNSEGKDVIDLSSYRYSYDVKDNAHFH 461
           DG T + +  + I +    +L  +S     +  SSYR+ Y  +   H+H
Sbjct: 293 DGLTNLNVLIVIIIIFISSSLSSSSSSSSTLSSSSYRHHYRYRHRQHYH 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,416,355
Number of Sequences: 59808
Number of extensions: 424104
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)