Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30639
(738 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK023827-1|BAB14692.1| 197|Homo sapiens protein ( Homo sapiens ... 32 2.5
AK000545-1|BAA91244.1| 442|Homo sapiens protein ( Homo sapiens ... 31 3.3
AL359079-4|CAI41540.1| 333|Homo sapiens Alport syndrome, mental... 30 7.5
AL359079-3|CAI41539.1| 210|Homo sapiens Alport syndrome, mental... 30 7.5
AL079334-2|CAI42538.1| 333|Homo sapiens Alport syndrome, mental... 30 7.5
AL079334-1|CAI42537.1| 210|Homo sapiens Alport syndrome, mental... 30 7.5
AL031319-2|CAI42704.1| 333|Homo sapiens Alport syndrome, mental... 30 7.5
AL031319-1|CAI42703.1| 210|Homo sapiens Alport syndrome, mental... 30 7.5
AJ012221-1|CAB58122.1| 333|Homo sapiens AMMECR1 protein. 30 7.5
AJ007014-1|CAB45546.1| 333|Homo sapiens AMMECR1 protein protein. 30 7.5
BC006444-1|AAH06444.1| 488|Homo sapiens coiled-coil domain cont... 30 10.0
AK027638-1|BAB55255.1| 488|Homo sapiens protein ( Homo sapiens ... 30 10.0
>AK023827-1|BAB14692.1| 197|Homo sapiens protein ( Homo sapiens
cDNA FLJ13765 fis, clone PLACE4000128, weakly similar to
Mus musculus putative transcription factor mRNA. ).
Length = 197
Score = 31.9 bits (69), Expect = 2.5
Identities = 24/77 (31%), Positives = 38/77 (49%)
Frame = +1
Query: 88 GSKVLDPLYVEAIKVDLAGLKLALTDAEITGMKDTIIDKLSVDLAKKQIQVICHVRFT*R 267
G K LDPL + I+ L K +T+++ +K +I K +KQ V+ R
Sbjct: 51 GKKQLDPLTIYGIRCHLF-YKFGITESDWYRIKQSIDSKCRTAWRRKQWGQSLVVKSFSR 109
Query: 268 VNIRLQGNSSFCPSQVM 318
R+ +SS+CPS+ M
Sbjct: 110 ---RMPNSSSYCPSEPM 123
>AK000545-1|BAA91244.1| 442|Homo sapiens protein ( Homo sapiens
cDNA FLJ20538 fis, clone KAT11255. ).
Length = 442
Score = 31.5 bits (68), Expect = 3.3
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +1
Query: 88 GSKVLDPLYVEAIKVDLAGLKLALTDAEITGMKDTIIDKLSVDLAKKQIQVICHVRFT*R 267
G K LDPL + I+ L K +T+++ +K +I K +KQ V+ R
Sbjct: 222 GKKQLDPLTIYGIRCHLF-YKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSR 280
Query: 268 VNIRLQGNSSFCPSQVM 318
R +SS+CPS+ M
Sbjct: 281 ---RTSNSSSYCPSEPM 294
>AL359079-4|CAI41540.1| 333|Homo sapiens Alport syndrome, mental
retardation, midface hypoplasia and elliptocytosis chro
protein.
Length = 333
Score = 30.3 bits (65), Expect = 7.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 604 CFDCIVNHLHGYFEERFSEFLRQRFPILI 518
CFD + HL+GY + R F + +P+ +
Sbjct: 134 CFDVLYCHLYGYQQPRTPRFTNEPYPLFV 162
>AL359079-3|CAI41539.1| 210|Homo sapiens Alport syndrome, mental
retardation, midface hypoplasia and elliptocytosis chro
protein.
Length = 210
Score = 30.3 bits (65), Expect = 7.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 604 CFDCIVNHLHGYFEERFSEFLRQRFPILI 518
CFD + HL+GY + R F + +P+ +
Sbjct: 11 CFDVLYCHLYGYQQPRTPRFTNEPYPLFV 39
>AL079334-2|CAI42538.1| 333|Homo sapiens Alport syndrome, mental
retardation, midface hypoplasia and elliptocytosis chro
protein.
Length = 333
Score = 30.3 bits (65), Expect = 7.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 604 CFDCIVNHLHGYFEERFSEFLRQRFPILI 518
CFD + HL+GY + R F + +P+ +
Sbjct: 134 CFDVLYCHLYGYQQPRTPRFTNEPYPLFV 162
>AL079334-1|CAI42537.1| 210|Homo sapiens Alport syndrome, mental
retardation, midface hypoplasia and elliptocytosis chro
protein.
Length = 210
Score = 30.3 bits (65), Expect = 7.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 604 CFDCIVNHLHGYFEERFSEFLRQRFPILI 518
CFD + HL+GY + R F + +P+ +
Sbjct: 11 CFDVLYCHLYGYQQPRTPRFTNEPYPLFV 39
>AL031319-2|CAI42704.1| 333|Homo sapiens Alport syndrome, mental
retardation, midface hypoplasia and elliptocytosis chro
protein.
Length = 333
Score = 30.3 bits (65), Expect = 7.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 604 CFDCIVNHLHGYFEERFSEFLRQRFPILI 518
CFD + HL+GY + R F + +P+ +
Sbjct: 134 CFDVLYCHLYGYQQPRTPRFTNEPYPLFV 162
>AL031319-1|CAI42703.1| 210|Homo sapiens Alport syndrome, mental
retardation, midface hypoplasia and elliptocytosis chro
protein.
Length = 210
Score = 30.3 bits (65), Expect = 7.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 604 CFDCIVNHLHGYFEERFSEFLRQRFPILI 518
CFD + HL+GY + R F + +P+ +
Sbjct: 11 CFDVLYCHLYGYQQPRTPRFTNEPYPLFV 39
>AJ012221-1|CAB58122.1| 333|Homo sapiens AMMECR1 protein.
Length = 333
Score = 30.3 bits (65), Expect = 7.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 604 CFDCIVNHLHGYFEERFSEFLRQRFPILI 518
CFD + HL+GY + R F + +P+ +
Sbjct: 134 CFDVLYCHLYGYQQPRTPRFTNEPYPLFV 162
>AJ007014-1|CAB45546.1| 333|Homo sapiens AMMECR1 protein protein.
Length = 333
Score = 30.3 bits (65), Expect = 7.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 604 CFDCIVNHLHGYFEERFSEFLRQRFPILI 518
CFD + HL+GY + R F + +P+ +
Sbjct: 134 CFDVLYCHLYGYQQPRTPRFTNEPYPLFV 162
>BC006444-1|AAH06444.1| 488|Homo sapiens coiled-coil domain
containing 77 protein.
Length = 488
Score = 29.9 bits (64), Expect = 10.0
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = +1
Query: 109 LYVEAIKVDLAGLKLALTDAEITGMKDTIIDKLSVDLAKKQIQVICHVRFT*RVNIRLQG 288
L VE K D+ L+ L D E K T+ + + DLA ++C VR + R ++QG
Sbjct: 415 LEVEGFKTDIKVLRQKLKDLEQMLYKATVNARANQDLA-----LLCEVRDSNRRAHKIQG 469
Query: 289 NSSFCPSQVMGTQ 327
S+V G +
Sbjct: 470 ELKNLKSKVFGLE 482
>AK027638-1|BAB55255.1| 488|Homo sapiens protein ( Homo sapiens
cDNA FLJ14732 fis, clone NT2RP3001969, weakly similar to
TRICHOHYALIN. ).
Length = 488
Score = 29.9 bits (64), Expect = 10.0
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = +1
Query: 109 LYVEAIKVDLAGLKLALTDAEITGMKDTIIDKLSVDLAKKQIQVICHVRFT*RVNIRLQG 288
L VE K D+ L+ L D E K T+ + + DLA ++C VR + R ++QG
Sbjct: 415 LEVEGFKTDIKVLRQKLKDLEQMLYKATVNARANQDLA-----LLCEVRDSNRRAHKIQG 469
Query: 289 NSSFCPSQVMGTQ 327
S+V G +
Sbjct: 470 ELKNLKSKVFGLE 482
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,588,050
Number of Sequences: 237096
Number of extensions: 2025432
Number of successful extensions: 6959
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6959
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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