Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30638
(623 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P50882 Cluster: 60S ribosomal protein L9; n=17; Eukaryo... 152 8e-36
UniRef50_P32969 Cluster: 60S ribosomal protein L9; n=86; Eukaryo... 127 2e-28
UniRef50_P49210 Cluster: 60S ribosomal protein L9; n=55; Eukaryo... 114 2e-24
UniRef50_Q10232 Cluster: 60S ribosomal protein L9-A; n=6; Eukary... 113 4e-24
UniRef50_Q54XI5 Cluster: 60S ribosomal protein L9; n=1; Dictyost... 112 7e-24
UniRef50_Q4P4X4 Cluster: Putative uncharacterized protein; n=1; ... 106 4e-22
UniRef50_P05738 Cluster: 60S ribosomal protein L9-A; n=40; Eukar... 104 2e-21
UniRef50_Q7QU08 Cluster: GLP_108_35846_36403; n=1; Giardia lambl... 99 1e-19
UniRef50_UPI00004985C5 Cluster: 60S ribosomal protein L9; n=2; E... 95 2e-18
UniRef50_O02376 Cluster: 60S ribosomal protein L9; n=1; Haemonch... 95 2e-18
UniRef50_Q9AW64 Cluster: 60S ribosomal protein L9; n=1; Guillard... 90 3e-17
UniRef50_A0DI71 Cluster: Chromosome undetermined scaffold_51, wh... 86 6e-16
UniRef50_Q8SSF7 Cluster: 60S RIBOSOMAL PROTEIN L9; n=1; Encephal... 84 2e-15
UniRef50_Q8U015 Cluster: 50S ribosomal protein L6P; n=14; Euryar... 80 4e-14
UniRef50_UPI0001554F35 Cluster: PREDICTED: similar to Chain A, S... 79 9e-14
UniRef50_Q5JJG4 Cluster: 50S ribosomal protein L6P; n=3; Archaea... 75 1e-12
UniRef50_A3CT13 Cluster: 50S ribosomal protein L6P; n=2; Methano... 71 3e-11
UniRef50_A2GN76 Cluster: Ribosomal protein L6, putative; n=2; Tr... 69 9e-11
UniRef50_UPI0000D9FBAF Cluster: PREDICTED: similar to 60S riboso... 68 2e-10
UniRef50_A1RXT3 Cluster: Ribosomal protein L6; n=2; Thermoprotei... 68 2e-10
UniRef50_Q8ZVA7 Cluster: 50S ribosomal protein L6P; n=5; Thermop... 67 4e-10
UniRef50_O05637 Cluster: 50S ribosomal protein L6P; n=8; Thermop... 65 1e-09
UniRef50_O28370 Cluster: 50S ribosomal protein L6P; n=4; Euryarc... 64 3e-09
UniRef50_UPI0000DA3DDB Cluster: PREDICTED: similar to 60S riboso... 64 3e-09
UniRef50_Q8PV34 Cluster: 50S ribosomal protein L6P; n=4; Methano... 62 1e-08
UniRef50_Q3LWE8 Cluster: Ribosomal protein L9; n=1; Bigelowiella... 60 3e-08
UniRef50_A0RVY9 Cluster: Ribosomal protein L6P/L9E; n=1; Cenarch... 59 7e-08
UniRef50_Q97BW0 Cluster: 50S ribosomal protein L6P; n=1; Thermop... 59 7e-08
UniRef50_P14135 Cluster: 50S ribosomal protein L6P; n=5; Halobac... 59 1e-07
UniRef50_UPI0000DA368E Cluster: PREDICTED: similar to 60S riboso... 58 2e-07
UniRef50_Q6L1B1 Cluster: 50S ribosomal protein L6P; n=3; Thermop... 55 1e-06
UniRef50_Q74MR6 Cluster: 50S ribosomal protein L6P; n=1; Nanoarc... 54 2e-06
UniRef50_Q673R2 Cluster: 50S ribosomal protein L6P; n=2; environ... 53 6e-06
UniRef50_A7DSX9 Cluster: Ribosomal protein L6; n=1; Candidatus N... 52 1e-05
UniRef50_Q8TW14 Cluster: 50S ribosomal protein L6P; n=3; cellula... 51 2e-05
UniRef50_Q5AEN3 Cluster: Putative uncharacterized protein; n=1; ... 43 0.005
UniRef50_Q6E6D2 Cluster: Large subunit ribosomal protein L9e; n=... 42 0.016
UniRef50_Q3ZZN4 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 38 0.15
UniRef50_A4M9T7 Cluster: 50S ribosomal protein L6; n=3; Thermoto... 38 0.26
UniRef50_A0BWM5 Cluster: Chromosome undetermined scaffold_132, w... 37 0.34
UniRef50_Q9ZAE4 Cluster: 50S ribosomal protein L6; n=4; cellular... 37 0.34
UniRef50_Q7UN05 Cluster: 50S ribosomal protein L6; n=3; Planctom... 36 0.60
UniRef50_Q48D51 Cluster: 50S ribosomal protein L6; n=6; Proteoba... 36 0.60
UniRef50_Q847P4 Cluster: 50S ribosomal protein L6; n=1; Aster ye... 35 1.8
UniRef50_Q11HR7 Cluster: 50S ribosomal protein L6; n=73; Proteob... 35 1.8
UniRef50_Q83ER1 Cluster: 50S ribosomal protein L6; n=108; Proteo... 35 1.8
UniRef50_Q6YR07 Cluster: 50S ribosomal protein L6; n=16; Firmicu... 34 2.4
UniRef50_Q30QS5 Cluster: Putative uncharacterized protein; n=1; ... 33 4.2
UniRef50_Q8ETW8 Cluster: 50S ribosomal protein L6; n=40; Bacteri... 33 4.2
UniRef50_Q8A491 Cluster: 50S ribosomal protein L6; n=34; Bacteri... 33 4.2
UniRef50_A5GIT1 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 33 5.6
UniRef50_UPI0000F2B3FB Cluster: PREDICTED: hypothetical protein;... 33 7.3
UniRef50_A5LSZ6 Cluster: 50S ribosomal protein L6; n=1; Streptoc... 33 7.3
UniRef50_Q0ID19 Cluster: 50S ribosomal protein L6; n=6; Bacteria... 33 7.3
UniRef50_A0UVM0 Cluster: Signal peptidase I precursor; n=2; Clos... 32 9.7
UniRef50_Q5FM76 Cluster: 50S ribosomal protein L6; n=10; Firmicu... 32 9.7
>UniRef50_P50882 Cluster: 60S ribosomal protein L9; n=17;
Eukaryota|Rep: 60S ribosomal protein L9 - Drosophila
melanogaster (Fruit fly)
Length = 190
Score = 152 bits (368), Expect = 8e-36
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
+NMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIRNFLGEKYIRRV+MAPGVTVVNS
Sbjct: 76 ENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNS 135
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQ 508
QKDELI+EGN +E VS SAALIQ
Sbjct: 136 TAQKDELIVEGNDIESVSGSAALIQ 160
Score = 105 bits (251), Expect = 1e-21
Identities = 49/80 (61%), Positives = 62/80 (77%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 209
M+ I +NQ VKIP + VK+R+VT+ G RG LKR+FKHLA+D+ M + R LKVEKWFG
Sbjct: 1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFG 60
Query: 210 SKKELAAVRTVCSHVRT*LK 269
+KKELAAVRTVCSH+ +K
Sbjct: 61 TKKELAAVRTVCSHIENMIK 80
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +1
Query: 508 ESTTVKNKDIRKFLDGLYVSEKTTVV 585
+STTVKNKDIRKFLDGLYVSEKTTVV
Sbjct: 161 QSTTVKNKDIRKFLDGLYVSEKTTVV 186
>UniRef50_P32969 Cluster: 60S ribosomal protein L9; n=86;
Eukaryota|Rep: 60S ribosomal protein L9 - Homo sapiens
(Human)
Length = 192
Score = 127 bits (306), Expect = 2e-28
Identities = 61/85 (71%), Positives = 70/85 (82%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
+NMIKGVT GF+YKMR+VYAHFPIN V E S++EIRNFLGEKYIRRV+M PGV S
Sbjct: 78 QNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVS 137
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQ 508
QKDELI+EGN +E VS+SAALIQ
Sbjct: 138 QAQKDELILEGNDIELVSNSAALIQ 162
Score = 89.4 bits (212), Expect = 6e-17
Identities = 39/82 (47%), Positives = 61/82 (74%), Gaps = 2/82 (2%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV--NPRLLKVEKW 203
MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++ + L+V+KW
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 204 FGSKKELAAVRTVCSHVRT*LK 269
+G++KELA VRT+CSHV+ +K
Sbjct: 61 WGNRKELATVRTICSHVQNMIK 82
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +1
Query: 508 ESTTVKNKDIRKFLDGLYVSEKTTV 582
++TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 163 QATTVKNKDIRKFLDGIYVSEKGTV 187
>UniRef50_P49210 Cluster: 60S ribosomal protein L9; n=55;
Eukaryota|Rep: 60S ribosomal protein L9 - Oryza sativa
subsp. japonica (Rice)
Length = 190
Score = 114 bits (274), Expect = 2e-24
Identities = 53/84 (63%), Positives = 66/84 (78%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
+N+I GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK +R+V M GVT++ S
Sbjct: 77 QNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRS 136
Query: 434 PKQKDELIIEGNSLEDVSSSAALI 505
K KDEL+++GN +E VS SAALI
Sbjct: 137 EKVKDELVLDGNDIELVSRSAALI 160
Score = 87.0 bits (206), Expect = 3e-16
Identities = 38/77 (49%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 206
MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++ R L+V+ WF
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60
Query: 207 GSKKELAAVRTVCSHVR 257
G+++ +AA+RT SHV+
Sbjct: 61 GTRRTMAAIRTAISHVQ 77
Score = 42.3 bits (95), Expect = 0.009
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +1
Query: 520 VKNKDIRKFLDGLYVSEKTTVVLD 591
VKNKDIRKFLDG+YVS+K T+ D
Sbjct: 166 VKNKDIRKFLDGIYVSDKGTITED 189
>UniRef50_Q10232 Cluster: 60S ribosomal protein L9-A; n=6;
Eukaryota|Rep: 60S ribosomal protein L9-A -
Schizosaccharomyces pombe (Fission yeast)
Length = 190
Score = 113 bits (271), Expect = 4e-24
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +2
Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S
Sbjct: 77 NMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISS 136
Query: 437 KQKDELIIEGNSLEDVSSSAALIQNLLQSR 526
KDE+I+EGNSLE+VS SAA I+ + R
Sbjct: 137 AVKDEIILEGNSLENVSQSAANIKQICNVR 166
Score = 60.5 bits (140), Expect = 3e-08
Identities = 28/72 (38%), Positives = 46/72 (63%)
Frame = +3
Query: 33 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 212
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61
Query: 213 KKELAAVRTVCS 248
+K A +R+V S
Sbjct: 62 RKHNACIRSVYS 73
Score = 37.9 bits (84), Expect = 0.20
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +1
Query: 520 VKNKDIRKFLDGLYVSEKTTV 582
V+NKDIRKFLDG+YVSE+ +
Sbjct: 165 VRNKDIRKFLDGIYVSERGNI 185
>UniRef50_Q54XI5 Cluster: 60S ribosomal protein L9; n=1;
Dictyostelium discoideum AX4|Rep: 60S ribosomal protein
L9 - Dictyostelium discoideum AX4
Length = 206
Score = 112 bits (269), Expect = 7e-24
Identities = 51/96 (53%), Positives = 70/96 (72%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
+NMI GVTKG++YKMR VYAHFPIN T+G ++EIRNF GEK +RR+++ G+T +
Sbjct: 94 ENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRN 153
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQNLLQSRIRISE 541
K KDE+++ GNSLE +S S A IQ L+S I+ +
Sbjct: 154 EKAKDEIVLTGNSLELLSQSCATIQ--LRSAIKYKD 187
Score = 64.9 bits (151), Expect = 1e-09
Identities = 27/58 (46%), Positives = 41/58 (70%)
Frame = +3
Query: 75 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCS 248
+TV VK R V V GPRG L ++F H +VDI +V + L V+ WFG++K++A ++T+ S
Sbjct: 34 VTVDVKGRSVKVTGPRGTLSKSFDHASVDINLVGKKELTVDLWFGNRKQIACIKTITS 91
Score = 36.7 bits (81), Expect = 0.45
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 493 CCSHSESTTVKNKDIRKFLDGLYVSEKTTV 582
C + + +K KD+RKFLDG+YVSE+ +
Sbjct: 174 CATIQLRSAIKYKDVRKFLDGIYVSERNVL 203
>UniRef50_Q4P4X4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 252
Score = 106 bits (255), Expect = 4e-22
Identities = 49/83 (59%), Positives = 60/83 (72%)
Frame = +2
Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
NMIKGVT GFQYKMRAVYAHFPIN + EIRNFLGEK +R + M GVT+
Sbjct: 139 NMIKGVTVGFQYKMRAVYAHFPINIIIAGDKKSAEIRNFLGEKRVRNIAMLEGVTIQEDK 198
Query: 437 KQKDELIIEGNSLEDVSSSAALI 505
QKD++++EGN ++ VS SAAL+
Sbjct: 199 AQKDQVLVEGNDIDLVSQSAALL 221
Score = 39.5 bits (88), Expect = 0.064
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +1
Query: 511 STTVKNKDIRKFLDGLYVSEKTTVV 585
+T V+NKDIRKFLDG+Y + K TVV
Sbjct: 224 ATLVRNKDIRKFLDGIYCTGKDTVV 248
Score = 33.9 bits (74), Expect = 3.2
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRN 140
M QI + +P ++V V SR+ TVKGPRG L ++
Sbjct: 1 MLQIFKELDLAVPADVSVSVSSRVFTVKGPRGSLTKS 37
>UniRef50_P05738 Cluster: 60S ribosomal protein L9-A; n=40;
Eukaryota|Rep: 60S ribosomal protein L9-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 191
Score = 104 bits (250), Expect = 2e-21
Identities = 56/114 (49%), Positives = 74/114 (64%), Gaps = 6/114 (5%)
Frame = +2
Query: 203 VRIQKGACRREDSLFTCK----NMIKGVTKGFQYKMRAVYAHFPINC--VTTEGNSIIEI 364
V + G + +L T K NMI GVTKG++YKMR VYAHFPIN V +G IE+
Sbjct: 55 VAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEV 114
Query: 365 RNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQNLLQSR 526
RNFLG+K IR V + GVT+ S KDE+++ GNS+EDVS +AA +Q + + R
Sbjct: 115 RNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVR 168
Score = 74.9 bits (176), Expect = 1e-12
Identities = 36/75 (48%), Positives = 51/75 (68%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 209
MK I Q++++P+G+TV +KSR+V V GPRG L +N KH+ V VN +L+KV G
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG 60
Query: 210 SKKELAAVRTVCSHV 254
+K +AA+RTV S V
Sbjct: 61 GRKHVAALRTVKSLV 75
Score = 37.5 bits (83), Expect = 0.26
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 520 VKNKDIRKFLDGLYVSEKTTVVLD 591
V+NKDIRKFLDG+YVS K + D
Sbjct: 167 VRNKDIRKFLDGIYVSHKGFITED 190
>UniRef50_Q7QU08 Cluster: GLP_108_35846_36403; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_108_35846_36403 - Giardia lamblia
ATCC 50803
Length = 185
Score = 98.7 bits (235), Expect = 1e-19
Identities = 47/89 (52%), Positives = 59/89 (66%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
+NM KGVT GF+YKMR YAHFPI + N IEIRNF+ + RR++ PGVT+ S
Sbjct: 74 ENMFKGVTYGFEYKMRLAYAHFPIAATVVDNNKAIEIRNFMHQIKTRRIECLPGVTIAMS 133
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQNLLQ 520
KDELI+ G S+EDVS +AA I L+
Sbjct: 134 TNVKDELILRGISIEDVSHTAARIHESLK 162
Score = 57.2 bits (132), Expect = 3e-07
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +3
Query: 39 IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 218
+ ++ +K+P + + R+VTVKG +G L R+F H +DI N + V WF K
Sbjct: 3 LCSSMTIKVPTDVECTINKRVVTVKGKKGTLVRDFSHAPLDITHAND-TISVAVWFPRGK 61
Query: 219 ELAAVRTVCSHVRT*LK 269
A RT+CSH+ K
Sbjct: 62 RNALPRTICSHIENMFK 78
Score = 35.1 bits (77), Expect = 1.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 508 ESTTVKNKDIRKFLDGLYVSEK 573
ES V NKD+RKFLDG YVS +
Sbjct: 159 ESLKVPNKDLRKFLDGCYVSSR 180
>UniRef50_UPI00004985C5 Cluster: 60S ribosomal protein L9; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L9 - Entamoeba histolytica HM-1:IMSS
Length = 197
Score = 94.7 bits (225), Expect = 2e-18
Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
KNMI GVTKG+QYKMR VYAHFP+ V + I+++NFLGEK R ++M GV V
Sbjct: 86 KNMITGVTKGYQYKMRVVYAHFPVTLVIADDGKSIQVQNFLGEKRTRHIEMYDGVVV--K 143
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQ--NLLQSR 526
KDE+ +EGN +E VS SAA I NL++++
Sbjct: 144 KLGKDEICLEGNDVEKVSQSAANIHAANLVRNK 176
Score = 54.8 bits (126), Expect = 2e-06
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 9/78 (11%)
Frame = +3
Query: 51 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI-------RMVNPR--LLKVEKW 203
+ V IP+G+ + + + + V GPRG L R F+H VDI + P+ ++ ++ W
Sbjct: 9 EHVVIPEGVNIEINRKNIKVTGPRGSLTREFQHPKVDIYASKLVVKKEGPKENVVVIDMW 68
Query: 204 FGSKKELAAVRTVCSHVR 257
+G++++ A VRT+ SH++
Sbjct: 69 YGNRRDSAVVRTIASHIK 86
Score = 37.5 bits (83), Expect = 0.26
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 520 VKNKDIRKFLDGLYVSEKTTVVLD 591
V+NKDIR+FLDG+YVSEK + D
Sbjct: 173 VRNKDIRQFLDGVYVSEKCLIEND 196
>UniRef50_O02376 Cluster: 60S ribosomal protein L9; n=1; Haemonchus
contortus|Rep: 60S ribosomal protein L9 - Haemonchus
contortus (Barber pole worm)
Length = 141
Score = 94.7 bits (225), Expect = 2e-18
Identities = 41/80 (51%), Positives = 58/80 (72%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 209
MK + +N V PDG+T VK+R+V V GPRG LKR+F+HL +++ V L+V KWFG
Sbjct: 1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEMERVGKNQLRVRKWFG 60
Query: 210 SKKELAAVRTVCSHVRT*LK 269
+KE+AA+RTVCSH++ +K
Sbjct: 61 VRKEIAAIRTVCSHIQNMIK 80
Score = 78.6 bits (185), Expect = 1e-13
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 406
+NMIKGVTKGF+YKMR+VYAHFPIN +G +EIRNFLGEK +R V +
Sbjct: 76 QNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126
>UniRef50_Q9AW64 Cluster: 60S ribosomal protein L9; n=1; Guillardia
theta|Rep: 60S ribosomal protein L9 - Guillardia theta
(Cryptomonas phi)
Length = 188
Score = 90.2 bits (214), Expect = 3e-17
Identities = 43/90 (47%), Positives = 61/90 (67%)
Frame = +2
Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
NMI GV+ GF+Y ++ +YAHFPIN T+ S +EIRNFLGEK IR++ M GV + +
Sbjct: 78 NMIVGVSLGFEYILQPIYAHFPINLSITDDGSCLEIRNFLGEKRIRKIYMGQGVKIKKNE 137
Query: 437 KQKDELIIEGNSLEDVSSSAALIQNLLQSR 526
+KDE+ + G+ L VS +AA IQ Q++
Sbjct: 138 AKKDEISVFGSDLNLVSLNAASIQQSCQAK 167
Score = 45.2 bits (102), Expect = 0.001
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL-LKVEKWF 206
M I +K+KIP + + K+R ++ G G + R+F+ + IR + + + W
Sbjct: 1 MLTIKTIRKIKIPKNVKIKTKARKISATGSLGSIIRSFEKTQISIRYFEKKKEIILLLWM 60
Query: 207 GSKKELAAVRTVCSHV 254
KK+LA + T+ SH+
Sbjct: 61 AGKKQLAKLNTIASHI 76
Score = 33.9 bits (74), Expect = 3.2
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 499 SHSESTTVKNKDIRKFLDGLYVSEK 573
S +S KNKD+RKFLDG+Y+ K
Sbjct: 159 SIQQSCQAKNKDLRKFLDGIYIIMK 183
>UniRef50_A0DI71 Cluster: Chromosome undetermined scaffold_51, whole
genome shotgun sequence; n=6; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_51, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 196
Score = 86.2 bits (204), Expect = 6e-16
Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Frame = +2
Query: 212 QKGACRREDSLFTCKNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 391
+K C+ +NMI+GVT G+++KM YAHFPI +EI+NFLGEK I
Sbjct: 71 RKQRCQVNSVASQIRNMIRGVTTGYKFKMVLAYAHFPIIINLIGNGQGVEIKNFLGEKII 130
Query: 392 RRVKMAPGVTVV-NSPKQKDELIIEGNSLEDVSSSAALI 505
R +K PGVT+ N ++K+ L ++GN L +VS + ALI
Sbjct: 131 RTIKCLPGVTITRNEAEEKNVLTLQGNDLNNVSLTCALI 169
Score = 56.4 bits (130), Expect = 5e-07
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM---VNPR------ 182
MK I+ + V IP+ + + KS++V VKGPRG L +NF+H A+DI++ VN +
Sbjct: 1 MKYILTEEHVPIPEKIEITQKSKVVKVKGPRGELTKNFRHSALDIQVQKKVNKKNNVAKS 60
Query: 183 LLKVEKWFGSKKELAAVRTVCSHVRT*LKE*LKASNTRCVLCMLTSPLTVS 335
+ V W +K+ V +V S +R ++ + VL P+ ++
Sbjct: 61 RVSVRMWQSYRKQRCQVNSVASQIRNMIRGVTTGYKFKMVLAYAHFPIIIN 111
Score = 40.3 bits (90), Expect = 0.037
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1
Query: 493 CCSHSESTTVKNKDIRKFLDGLYVSEK 573
C ++ VKNKDIR+FLDG+YVSEK
Sbjct: 166 CALIHQACAVKNKDIRQFLDGIYVSEK 192
>UniRef50_Q8SSF7 Cluster: 60S RIBOSOMAL PROTEIN L9; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L9 -
Encephalitozoon cuniculi
Length = 204
Score = 84.2 bits (199), Expect = 2e-15
Identities = 44/95 (46%), Positives = 59/95 (62%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
+N IK VT GF Y M+AVY HF IN E I+ ++NFLGEK ++R +M G V
Sbjct: 95 RNAIKAVTVGFAYTMKAVYNHFSINMEIKEDGKILLVKNFLGEKNVKRFRMR-GAARVRL 153
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQNLLQSRIRIS 538
++KD ++IEG SL DVS SA I N +++ R S
Sbjct: 154 DERKDTIVIEGPSLSDVSQSAGTITNECKAKNRDS 188
Score = 37.5 bits (83), Expect = 0.26
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +3
Query: 15 KQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG-VLKRNFKH-LAVDIRMVNPRLL 188
K P M+ I+ + VK+P+ T + ++ T +GP+G +++ +H L DI N +
Sbjct: 17 KDLPLMR-ILVTRIVKVPEDCTATQEGKIFTFQGPKGSIVEDCTRHPLTFDIHEGN---I 72
Query: 189 KVEKWFGSKKELAAVRTVCSHVRT*LK 269
++ W G +K +A TV S +R +K
Sbjct: 73 RIRLWNGKRKAMALAITVESLLRNAIK 99
>UniRef50_Q8U015 Cluster: 50S ribosomal protein L6P; n=14;
Euryarchaeota|Rep: 50S ribosomal protein L6P -
Pyrococcus furiosus
Length = 184
Score = 80.2 bits (189), Expect = 4e-14
Identities = 43/85 (50%), Positives = 59/85 (69%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
+NMIKGVT+GF YK++ VY+HFPI+ V +G+ +I I NFLGEK R+ K+ PGVTV
Sbjct: 76 RNMIKGVTEGFTYKLKVVYSHFPIS-VKVQGDEVI-IENFLGEKAPRKAKILPGVTV--- 130
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQ 508
+ E+I+EG E V +AA I+
Sbjct: 131 KVRGQEIIVEGIDKEAVGQTAANIE 155
Score = 47.2 bits (107), Expect = 3e-04
Identities = 25/73 (34%), Positives = 44/73 (60%)
Frame = +3
Query: 51 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 230
++V+IP+G+ V V+ V VKGP+G L+R F + I + ++ + K F +K++A
Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTEDGNVV-IYKDFPRRKDVAI 67
Query: 231 VRTVCSHVRT*LK 269
RT +H+R +K
Sbjct: 68 ARTFAAHIRNMIK 80
>UniRef50_UPI0001554F35 Cluster: PREDICTED: similar to Chain A,
Solution Structure Of The N-Terminal Domain Of Human
Ribosomal Protein L9; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to Chain A, Solution Structure Of The
N-Terminal Domain Of Human Ribosomal Protein L9 -
Ornithorhynchus anatinus
Length = 143
Score = 79.0 bits (186), Expect = 9e-14
Identities = 37/82 (45%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLK--VEKW 203
MK I++NQ V IP + + +K R V VKGP+G L R+F H+ V++ ++ +L K V+KW
Sbjct: 1 MKTILSNQTVDIPANIGIILKGRTVIVKGPQGSLHRDFNHINVELSLLGKKLKKFHVDKW 60
Query: 204 FGSKKELAAVRTVCSHVRT*LK 269
+G++KELA V T+CS V+ +K
Sbjct: 61 WGNRKELATVHTICSPVQNTIK 82
>UniRef50_Q5JJG4 Cluster: 50S ribosomal protein L6P; n=3;
Archaea|Rep: 50S ribosomal protein L6P - Pyrococcus
kodakaraensis (Thermococcus kodakaraensis)
Length = 184
Score = 75.4 bits (177), Expect = 1e-12
Identities = 40/84 (47%), Positives = 57/84 (67%)
Frame = +2
Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
NMIKGVT+GF+Y+++ VY+HFP+ V +G+ ++ I NFLGEK RR K+ PGVTV
Sbjct: 77 NMIKGVTEGFKYRLKVVYSHFPMT-VKVQGDEVV-IENFLGEKNPRRAKILPGVTV---K 131
Query: 437 KQKDELIIEGNSLEDVSSSAALIQ 508
+ E+ +EG E V +AA I+
Sbjct: 132 VKGSEIEVEGIDKEAVGQTAANIE 155
Score = 52.8 bits (121), Expect = 6e-06
Identities = 30/94 (31%), Positives = 53/94 (56%)
Frame = +3
Query: 51 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 230
++++IP+G+ V V+ V VKGP+G L+R K+ V I + +++ + K F KK++A
Sbjct: 9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIFTEDGKVV-IYKEFPRKKDVAI 67
Query: 231 VRTVCSHVRT*LKE*LKASNTRCVLCMLTSPLTV 332
VRT +H+ +K + R + P+TV
Sbjct: 68 VRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTV 101
>UniRef50_A3CT13 Cluster: 50S ribosomal protein L6P; n=2;
Methanomicrobiales|Rep: 50S ribosomal protein L6P -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 174
Score = 70.5 bits (165), Expect = 3e-11
Identities = 40/86 (46%), Positives = 55/86 (63%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
KNMI+GV G++Y+M+ VY+HFPI + +GN +EI NFLGEK R K+ GVTV
Sbjct: 72 KNMIRGVADGYEYRMKVVYSHFPIQ-LKQQGNR-LEITNFLGEKQPRIAKIIEGVTVKIG 129
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQN 511
DE+ I G E V ++AA I++
Sbjct: 130 ---NDEVTITGIDKEKVGNTAANIEH 152
Score = 35.9 bits (79), Expect = 0.79
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +3
Query: 51 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 230
++V+IP G+ V + ++TV GP+G L R+ + +D+ MV + V K+ LA
Sbjct: 5 RQVEIPPGVDVTLDGGVLTVSGPKGTLVRDMRFPQIDL-MVEGGEVVVSTASEKKRILAM 63
Query: 231 VRTVCSHVR 257
T+ +H +
Sbjct: 64 TGTLEAHAK 72
>UniRef50_A2GN76 Cluster: Ribosomal protein L6, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 197
Score = 68.9 bits (161), Expect = 9e-11
Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTV-VN 430
KNMI GVT G++YKM VY+HFPI +E + F+G K + V GV + N
Sbjct: 84 KNMITGVTLGWRYKMHFVYSHFPIKHTCSEDGRTFDFNGFMGHKEHKIVTAPEGVRIWSN 143
Query: 431 SPKQKDELIIEGNSLEDVSSSAALIQNL 514
KDE+ IEG +LEDVS I L
Sbjct: 144 ESVAKDEINIEGANLEDVSLVCGQIHQL 171
Score = 33.9 bits (74), Expect = 3.2
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 490 LCCSHSESTTVKNKDIRKFLDGLYV 564
+C + T +K+KD+RKFLDG+YV
Sbjct: 164 VCGQIHQLTKIKDKDLRKFLDGIYV 188
Score = 33.1 bits (72), Expect = 5.6
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Frame = +3
Query: 33 KQIVANQKVKIPDGLTVHVKSRLVTV--KGPR----GVLKRNFKHLAVDIRM-VNPRLLK 191
+ ++ + KIP+ + VKS +VT+ + P+ L ++ HL +D N +
Sbjct: 3 RPVLHQEHFKIPENIKCTVKSGVVTIEHQDPKDKKTSKLVKDLSHLKLDFEYDENDHQIV 62
Query: 192 VEKWFGSKKELAAVRTVCSHVR 257
WFG++K LA + T+ V+
Sbjct: 63 ARCWFGNRKLLARIGTLFGIVK 84
>UniRef50_UPI0000D9FBAF Cluster: PREDICTED: similar to 60S ribosomal
protein L9, partial; n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L9, partial - Macaca
mulatta
Length = 179
Score = 68.1 bits (159), Expect = 2e-10
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Frame = +3
Query: 30 MKQIVANQKVKIP-DGLTVHV--KSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVE 197
MK I + ++IP DG TV V KSR + V G G L+R F+H+ VD+++V R + VE
Sbjct: 60 MKTIHSQIDIQIPEDGSTVKVTLKSRHIVVSGKYGKLERTFRHIPVDMKLVEDGRKITVE 119
Query: 198 KWFGSKKELAAVRTVCSHV 254
WFG K A +RTVCSH+
Sbjct: 120 MWFGLTKNKACIRTVCSHI 138
Score = 56.4 bits (130), Expect = 5e-07
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFL 376
+NMI GV + +QYK+R VYAHFPIN T S IEIRNFL
Sbjct: 139 ENMITGVRQRYQYKLRFVYAHFPINSNITNDGSTIEIRNFL 179
>UniRef50_A1RXT3 Cluster: Ribosomal protein L6; n=2;
Thermoprotei|Rep: Ribosomal protein L6 - Thermofilum
pendens (strain Hrk 5)
Length = 191
Score = 68.1 bits (159), Expect = 2e-10
Identities = 39/83 (46%), Positives = 56/83 (67%)
Frame = +2
Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
NMI GVTKG++YK++ VYAHFP++ + E + II I NFLGE+ R + PG V
Sbjct: 77 NMIIGVTKGYRYKLKIVYAHFPMS-LKVEKDKII-IENFLGERGKRIAGIMPGAKV---K 131
Query: 437 KQKDELIIEGNSLEDVSSSAALI 505
+KD++I+EG L+ V+ +AA I
Sbjct: 132 IEKDDVIVEGIDLDAVAQTAANI 154
Score = 48.4 bits (110), Expect = 1e-04
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHL-AVDIRMVNPRLLKVEKWF 206
M+ + + V IP+G+ VHV + V V+GP G ++++F H + IR V + VE +
Sbjct: 1 MRVLQKTESVPIPEGVKVHVNGKRVEVEGPLGKVEKDFSHARRISIR-VEGNSVVVETFH 59
Query: 207 GSKKELAAVRTVCS 248
+KK+ A V T+ S
Sbjct: 60 ATKKDYALVGTIAS 73
>UniRef50_Q8ZVA7 Cluster: 50S ribosomal protein L6P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L6P -
Pyrobaculum aerophilum
Length = 196
Score = 66.9 bits (156), Expect = 4e-10
Identities = 36/85 (42%), Positives = 54/85 (63%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
KNM GVT+G++YK++ +Y HFP+ V +GN ++ I NFLG K + + GV V
Sbjct: 80 KNMFLGVTRGWRYKLKVIYTHFPM-LVKVQGNQLV-IENFLGRKSKITLNIPKGVKV--E 135
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQ 508
K K++++IEG E VS+ AA +Q
Sbjct: 136 VKGKEDIVIEGIDRELVSTFAAAVQ 160
Score = 32.7 bits (71), Expect = 7.3
Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSR-----LVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 194
M+ + + ++V+IP G++V ++ +V VKGP G + + FK+ V + + + +++ +
Sbjct: 1 MRVVYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQDGKIV-M 59
Query: 195 EKWFGSKKELAAVRT 239
E + K+E A + T
Sbjct: 60 EVFKARKREYAILGT 74
>UniRef50_O05637 Cluster: 50S ribosomal protein L6P; n=8;
Thermoprotei|Rep: 50S ribosomal protein L6P - Sulfolobus
acidocaldarius
Length = 189
Score = 64.9 bits (151), Expect = 1e-09
Identities = 31/86 (36%), Positives = 56/86 (65%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
KNMI G G++Y ++ + HFPI+ V G+ +++ N +GEK IRR K+ PGV V
Sbjct: 79 KNMITGTINGYRYYLKVISTHFPIS-VKVSGDE-VQVSNLIGEKNIRRAKILPGVKVT-- 134
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQN 511
+ +++++EG+ + +V+ +AA I++
Sbjct: 135 -VKGEDIVVEGSDIYNVAQTAANIES 159
Score = 40.3 bits (90), Expect = 0.037
Identities = 19/77 (24%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM-VNPRLLKVEKWF 206
+K ++++IPD + V +++ ++ VKGP+G + ++F + A IR+ +N + +E F
Sbjct: 4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSY-AKGIRIQLNEGKIILETTF 62
Query: 207 GSKKELAAVRTVCSHVR 257
+++ A + ++ +H++
Sbjct: 63 ADRRKKALLYSIIAHIK 79
>UniRef50_O28370 Cluster: 50S ribosomal protein L6P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L6P -
Archaeoglobus fulgidus
Length = 196
Score = 64.1 bits (149), Expect = 3e-09
Identities = 34/85 (40%), Positives = 53/85 (62%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
+N+I GV +GF+Y ++ VYAHFPI V EGN +I I NF+GEK+ RR K+ V S
Sbjct: 94 ENLITGVKEGFEYHLKVVYAHFPIK-VRVEGNEVI-IENFIGEKHPRRAKIVGRAQVEIS 151
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQ 508
+ ++ + G +E+ +AA ++
Sbjct: 152 GQ---DIYVRGIDIEECGQTAANLE 173
>UniRef50_UPI0000DA3DDB Cluster: PREDICTED: similar to 60S ribosomal
protein L9; n=3; Euarchontoglires|Rep: PREDICTED:
similar to 60S ribosomal protein L9 - Rattus norvegicus
Length = 145
Score = 63.7 bits (148), Expect = 3e-09
Identities = 41/85 (48%), Positives = 50/85 (58%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
+NMIKGV+ GF+YK+R+VYAHFP+N V+M GV S
Sbjct: 43 QNMIKGVSLGFRYKVRSVYAHFPLNV----------------------VQMRTGVACSVS 80
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQ 508
QKDELI+EGN E VS+SAALIQ
Sbjct: 81 QAQKDELILEGNDTELVSNSAALIQ 105
Score = 39.9 bits (89), Expect = 0.048
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = +1
Query: 508 ESTTVKNKDIRKFLDGLYVSEKTTV 582
++T V+N+DIRKF+DG+YVSEK T+
Sbjct: 106 KATAVENQDIRKFVDGIYVSEKGTM 130
>UniRef50_Q8PV34 Cluster: 50S ribosomal protein L6P; n=4;
Methanomicrobia|Rep: 50S ribosomal protein L6P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 176
Score = 62.1 bits (144), Expect = 1e-08
Identities = 38/85 (44%), Positives = 54/85 (63%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
KN+I GV++GF+ KM VYAHFP+ V EG +++ I NFLGEK R K+ G T V
Sbjct: 74 KNLIIGVSEGFECKMNIVYAHFPMQ-VKVEGKTLV-IGNFLGEKKPRIAKIL-GETKVK- 129
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQ 508
+E+++ G + EDV +AA I+
Sbjct: 130 -VSGNEIVVSGINKEDVGQTAANIE 153
Score = 39.9 bits (89), Expect = 0.048
Identities = 19/67 (28%), Positives = 39/67 (58%)
Frame = +3
Query: 57 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 236
++IP+G++V + + T KGP+G ++R F + + I + ++ V+ K++ A V
Sbjct: 9 IEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGEVV-VDAESSRKEQKAMVG 67
Query: 237 TVCSHVR 257
T SH++
Sbjct: 68 TFASHLK 74
>UniRef50_Q3LWE8 Cluster: Ribosomal protein L9; n=1; Bigelowiella
natans|Rep: Ribosomal protein L9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 190
Score = 60.5 bits (140), Expect = 3e-08
Identities = 31/85 (36%), Positives = 47/85 (55%)
Frame = +2
Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
NMI GV+KGF Y ++ VY+HFPI+ + + +EI N G K I + V V +
Sbjct: 79 NMIIGVSKGFTYLLKIVYSHFPISVKYIQNENTLEITNLFGLKRIDSFFIPSSVQVCTNN 138
Query: 437 KQKDELIIEGNSLEDVSSSAALIQN 511
K E+I+ +E + ++LIQN
Sbjct: 139 LNKKEIILLSKDIETLGILSSLIQN 163
>UniRef50_A0RVY9 Cluster: Ribosomal protein L6P/L9E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein L6P/L9E -
Cenarchaeum symbiosum
Length = 165
Score = 59.3 bits (137), Expect = 7e-08
Identities = 31/85 (36%), Positives = 55/85 (64%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
+N+ +GV G+ K++ VYAHFPI + +G ++I + NF GE+ R+ K+ G VV+
Sbjct: 60 RNLCEGVGVGYTIKLKVVYAHFPIT-IKQDG-AMILVENFQGERSARKAKIVGGTKVVS- 116
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQ 508
+ +++I+ G+ L DVS +AA ++
Sbjct: 117 --KGEDVIVTGHVLTDVSQTAANLE 139
Score = 33.9 bits (74), Expect = 3.2
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 508 ESTTVKNKDIRKFLDGLYVSEK 573
+ T VKNKD R FLDG+YV EK
Sbjct: 140 QGTKVKNKDHRVFLDGVYVYEK 161
>UniRef50_Q97BW0 Cluster: 50S ribosomal protein L6P; n=1;
Thermoplasma volcanium|Rep: 50S ribosomal protein L6P -
Thermoplasma volcanium
Length = 178
Score = 59.3 bits (137), Expect = 7e-08
Identities = 33/84 (39%), Positives = 54/84 (64%)
Frame = +2
Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
NM+KG+ +GFQY+M+ Y+HFP+ V+ +G +++ I NF GE+ R ++ G T V+
Sbjct: 76 NMVKGLKEGFQYEMKIDYSHFPMR-VSVKGKTVV-IENFFGERSPRTAEIV-GETQVS-- 130
Query: 437 KQKDELIIEGNSLEDVSSSAALIQ 508
+ D L + G S +DV +AA I+
Sbjct: 131 VKGDRLFLNGPSKKDVGETAANIE 154
>UniRef50_P14135 Cluster: 50S ribosomal protein L6P; n=5;
Halobacteriaceae|Rep: 50S ribosomal protein L6P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 178
Score = 58.8 bits (136), Expect = 1e-07
Identities = 36/87 (41%), Positives = 51/87 (58%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
+NM GVT+G++Y M Y+HFP+ V EG+ ++ I NFLGEK RR + G T V
Sbjct: 71 ENMFHGVTEGWEYGMEVFYSHFPMQ-VNVEGDEVV-IENFLGEKAPRRTTI-HGDTDVEI 127
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQNL 514
+EL + G +E V +AA I+ L
Sbjct: 128 --DGEELTVSGPDIEAVGQTAADIEQL 152
>UniRef50_UPI0000DA368E Cluster: PREDICTED: similar to 60S ribosomal
protein L9; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L9 - Rattus norvegicus
Length = 92
Score = 58.0 bits (134), Expect = 2e-07
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = +2
Query: 281 GFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELI 457
GF Y+MR+VYA FP N + E S+IE + +G+KYI RV++ V S QK+EL+
Sbjct: 33 GFHYRMRSVYAGFPTNVIIQENGSVIEHWSAMGKKYIHRVQIRTSVAFYASQAQKNELM 91
>UniRef50_Q6L1B1 Cluster: 50S ribosomal protein L6P; n=3;
Thermoplasmatales|Rep: 50S ribosomal protein L6P -
Picrophilus torridus
Length = 180
Score = 55.2 bits (127), Expect = 1e-06
Identities = 32/85 (37%), Positives = 48/85 (56%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
K +I+GVTKGF+Y M+ + HFP+ V+ G+ +I + NFLGEK R K+ G V
Sbjct: 75 KLLIEGVTKGFEYHMKIDFTHFPMR-VSVRGDKLI-VENFLGEKSPRSAKIVDGCKV--- 129
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQ 508
+ D + I G + +AA I+
Sbjct: 130 SVKGDRITINGIDKRKIGETAANIE 154
>UniRef50_Q74MR6 Cluster: 50S ribosomal protein L6P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L6P -
Nanoarchaeum equitans
Length = 192
Score = 54.4 bits (125), Expect = 2e-06
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK--YIRRVKMAPGVTV- 424
KNM++GV F Y+++ Y HFP+ V EGN +I + NFLGEK I+ + V V
Sbjct: 75 KNMLEGVQNPFVYRLKVCYTHFPMR-VKLEGNKLI-VENFLGEKAPIIKELPYLDKVKVK 132
Query: 425 VNSPKQKDELIIEGNSLEDVSSSAALIQ 508
+ K + E+++E E A++I+
Sbjct: 133 IEQNKDETEIVVESPDKEKAGIVASMIE 160
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/101 (23%), Positives = 51/101 (50%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 209
M+ + ++ IP+ + V ++ ++ V GP+G ++R F H + + VN + +E +F
Sbjct: 1 MRIPIIKYEIPIPENVKVSYENNILKVSGPKGEVERKFYHPLIKL-SVNDNKIILETYFA 59
Query: 210 SKKELAAVRTVCSHVRT*LKE*LKASNTRCVLCMLTSPLTV 332
+++E + T SH++ L+ R +C P+ V
Sbjct: 60 TRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRV 100
>UniRef50_Q673R2 Cluster: 50S ribosomal protein L6P; n=2;
environmental samples|Rep: 50S ribosomal protein L6P -
uncultured marine group II euryarchaeote DeepAnt-JyKC7
Length = 188
Score = 52.8 bits (121), Expect = 6e-06
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP--GVTVVN 430
NM +GV GF+YK++AVY+HFP+ + GN + + N GEK + RV P V
Sbjct: 77 NMARGVDSGFEYKLKAVYSHFPMT-IRVNGNQ-MTVTNLFGEK-VPRVAALPWSPAEVEV 133
Query: 431 SPKQKDELIIEGNSLEDVSSSAALIQ 508
+ K ++ + G E V +AA I+
Sbjct: 134 KVQNKTDVTVSGADREKVGQTAANIE 159
Score = 33.5 bits (73), Expect = 4.2
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +3
Query: 54 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 233
K+ +P+G+T V VTV L R F+H +++R + L+V KKE A
Sbjct: 10 KISLPEGVTAAVNGNDVTVAKDGNSLTREFRHPRIEVRDSSGE-LEVFVNLPRKKEKALA 68
Query: 234 RTVCSHV 254
T +H+
Sbjct: 69 GTWAAHL 75
>UniRef50_A7DSX9 Cluster: Ribosomal protein L6; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L6
- Candidatus Nitrosopumilus maritimus SCM1
Length = 185
Score = 52.0 bits (119), Expect = 1e-05
Identities = 30/85 (35%), Positives = 50/85 (58%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
+N+ +G+ +G+ KM+ V+AHFPI V EG I+ I NF GE+ R + V+
Sbjct: 78 RNICEGLVEGYTIKMKVVFAHFPIT-VKVEGKKIL-IENFQGERAPRSTHIMGNTKVI-- 133
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQ 508
PK +D +++ G D++ +AA I+
Sbjct: 134 PKGED-VLLTGEVWTDITQTAANIE 157
Score = 35.9 bits (79), Expect = 0.79
Identities = 21/93 (22%), Positives = 48/93 (51%)
Frame = +3
Query: 54 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 233
+V+IP+G+TV ++ +GP G +NF+++ V I + + + + ++ K++ A +
Sbjct: 12 QVEIPEGVTVTQNKNMLLFEGPLGKTHKNFRNIPVKIEIADGK-VNLKTIGERKRDYAIL 70
Query: 234 RTVCSHVRT*LKE*LKASNTRCVLCMLTSPLTV 332
T S +R + ++ + + P+TV
Sbjct: 71 HTARSIIRNICEGLVEGYTIKMKVVFAHFPITV 103
Score = 33.9 bits (74), Expect = 3.2
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +1
Query: 511 STTVKNKDIRKFLDGLYVSEK 573
+T VKNKD R FLDG+YV EK
Sbjct: 159 TTKVKNKDHRVFLDGIYVYEK 179
>UniRef50_Q8TW14 Cluster: 50S ribosomal protein L6P; n=3; cellular
organisms|Rep: 50S ribosomal protein L6P - Methanopyrus
kandleri
Length = 204
Score = 51.2 bits (117), Expect = 2e-05
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA-PGVTVVN 430
+NM KGVT+G +YK++ VY+HFP + + I NF+GE R ++ P T V
Sbjct: 93 ENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEV- 151
Query: 431 SPKQKDELIIEGNSLEDVSSSAALIQ 508
Q ++I+ G E V +AA ++
Sbjct: 152 -IVQGQDIIVRGIDKEAVGQTAANLE 176
>UniRef50_Q5AEN3 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 140
Score = 43.2 bits (97), Expect = 0.005
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = -2
Query: 511 ILNESSRARDIFQRVAFND*FILLFWRVNDSHTRCHLYPSDVFLTQEVTYLNN*ITL--S 338
+LN SS R+ FQ V N+ FILL R T S+ F TQE++ N +T+ +
Sbjct: 46 LLNISSILRNSFQGVTRNNQFILLSRRNFHGDTFMDFNFSNSFFTQEISNFNVILTIFFN 105
Query: 337 GDTVNGEVSIHSTHLVLEAFSYSFNHV 257
VN E+ I+ +HLV FS + + V
Sbjct: 106 NVNVNWEMRINKSHLVFVTFSDTSDQV 132
>UniRef50_Q6E6D2 Cluster: Large subunit ribosomal protein L9e; n=1;
Antonospora locustae|Rep: Large subunit ribosomal
protein L9e - Antonospora locustae (Nosema locustae)
Length = 160
Score = 41.5 bits (93), Expect = 0.016
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH--LAVDIRMVNPRL 185
MK+++ +KV+IP+G +V + R++TV+G R R+ H L +D+ + RL
Sbjct: 1 MKRLLCEEKVEIPEGCSVEILERVMTVRGKRATAVRDLSHFVLTMDVHEGHVRL 54
>UniRef50_Q3ZZN4 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Dehalococcoides
sp. (strain CBDB1)
Length = 182
Score = 38.3 bits (85), Expect = 0.15
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 42 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFK 146
+ +K+P G+ V + VTVKGP+G L R+F+
Sbjct: 4 IGKMPIKVPPGIKVDINGNDVTVKGPKGTLSRSFR 38
>UniRef50_A4M9T7 Cluster: 50S ribosomal protein L6; n=3;
Thermotogaceae|Rep: 50S ribosomal protein L6 - Petrotoga
mobilis SJ95
Length = 186
Score = 37.5 bits (83), Expect = 0.26
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Frame = +3
Query: 42 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNF-KHLAVDIRMVNPRLLK----VEKWF 206
+A++ IPDG+ + V + + +KG G L N ++L VD R N ++K V K
Sbjct: 6 IADKPTIIPDGVELSVDGQTIKIKGKNGELSLNLPEYLEVD-RDNNELMIKTKEGVVKRS 64
Query: 207 GSKKELAAVR-TVCSHVRT*LK 269
+K L A+R T SHVR +K
Sbjct: 65 SDEKRLKALRGTFTSHVRNMIK 86
>UniRef50_A0BWM5 Cluster: Chromosome undetermined scaffold_132,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_132,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 167
Score = 37.1 bits (82), Expect = 0.34
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +3
Query: 96 RLVTVKGPRGVLKRNFKHLAVDIRM 170
+L+ + GPRG+L RNFKH ++DI++
Sbjct: 53 KLIMIIGPRGILNRNFKHASLDIQV 77
>UniRef50_Q9ZAE4 Cluster: 50S ribosomal protein L6; n=4; cellular
organisms|Rep: 50S ribosomal protein L6 - Thermotoga
maritima
Length = 184
Score = 37.1 bits (82), Expect = 0.34
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 42 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNF 143
+A + + +P G+TV +K +V VKGP+G L + F
Sbjct: 4 LAKKPIVLPQGVTVEIKDNVVKVKGPKGELSQEF 37
>UniRef50_Q7UN05 Cluster: 50S ribosomal protein L6; n=3;
Planctomycetaceae|Rep: 50S ribosomal protein L6 -
Rhodopirellula baltica
Length = 181
Score = 36.3 bits (80), Expect = 0.60
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 42 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH 149
+ N+ V IP G+TV + R + V+GP+G K +FKH
Sbjct: 4 IGNKPVAIPSGVTVSIADRNIDVEGPKG--KLSFKH 37
>UniRef50_Q48D51 Cluster: 50S ribosomal protein L6; n=6;
Proteobacteria|Rep: 50S ribosomal protein L6 -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 179
Score = 36.3 bits (80), Expect = 0.60
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +3
Query: 42 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 173
VA VK+P G+ V + +L++VKGP+G L+ H +V++ +V
Sbjct: 4 VAKNPVKLPSGVEVKLVGQLLSVKGPKGTLEL-IIHSSVEVEIV 46
>UniRef50_Q847P4 Cluster: 50S ribosomal protein L6; n=1; Aster
yellows phytoplasma|Rep: 50S ribosomal protein L6 -
Aster yellows phytoplasma
Length = 175
Score = 34.7 bits (76), Expect = 1.8
Identities = 21/86 (24%), Positives = 43/86 (50%)
Frame = +2
Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
NMIKGV+ GF+ K+ + F N + N I+ + +G + +K+ +T+
Sbjct: 82 NMIKGVSNGFKKKLELIGVGFRAN-INNNNNQILNLN--IGYSHNIMIKLPQSITLEVKM 138
Query: 437 KQKDELIIEGNSLEDVSSSAALIQNL 514
+ ++I++ + + AA I++L
Sbjct: 139 DKNPQIILKSYDKQLLGIVAAKIRSL 164
>UniRef50_Q11HR7 Cluster: 50S ribosomal protein L6; n=73;
Proteobacteria|Rep: 50S ribosomal protein L6 -
Mesorhizobium sp. (strain BNC1)
Length = 177
Score = 34.7 bits (76), Expect = 1.8
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 42 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLK 134
+ + V +P G+T +V ++VT KGP+G LK
Sbjct: 4 IGKKPVPVPQGVTANVDGQVVTAKGPKGELK 34
>UniRef50_Q83ER1 Cluster: 50S ribosomal protein L6; n=108;
Proteobacteria|Rep: 50S ribosomal protein L6 - Coxiella
burnetii
Length = 178
Score = 34.7 bits (76), Expect = 1.8
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 42 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL 185
VA +KIP G+ V+V + +TVKG G L R H AV + + L
Sbjct: 5 VAKNPIKIPTGVEVNVAGQQITVKGKLGTLTRVI-HRAVKVTKTDAEL 51
>UniRef50_Q6YR07 Cluster: 50S ribosomal protein L6; n=16;
Firmicutes|Rep: 50S ribosomal protein L6 - Onion yellows
phytoplasma
Length = 184
Score = 34.3 bits (75), Expect = 2.4
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +3
Query: 42 VANQKVKIPDGLTVHVKSR-LVTVKGPRGVLKRNFKH 149
V N+ +++P+ + V +K R ++V+GP+G L+ F H
Sbjct: 4 VGNKAIEVPNAVKVDIKDRNFISVEGPKGKLEYQFNH 40
>UniRef50_Q30QS5 Cluster: Putative uncharacterized protein; n=1;
Thiomicrospira denitrificans ATCC 33889|Rep: Putative
uncharacterized protein - Thiomicrospira denitrificans
(strain ATCC 33889 / DSM 1351)
Length = 321
Score = 33.5 bits (73), Expect = 4.2
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = -2
Query: 280 FSYSFNHVLTCEQTVLTAASSFLDPNHFSTFRRR--GFTMRMSTAKCLKFLLRTPRGPLT 107
F S+ ++LTC++++ + LD N F+++ FT +M K + LRTP G
Sbjct: 57 FIESYENILTCDKSLSSLNLYSLDENQNFKFKKKYSAFTGKMKGDKIKEGDLRTPTGIYQ 116
Query: 106 VTRR 95
+T++
Sbjct: 117 ITQK 120
>UniRef50_Q8ETW8 Cluster: 50S ribosomal protein L6; n=40;
Bacteria|Rep: 50S ribosomal protein L6 - Oceanobacillus
iheyensis
Length = 178
Score = 33.5 bits (73), Expect = 4.2
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 42 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEK 200
V + V+IP+G+ + + + VTVKGP+G L R H + I + +L VE+
Sbjct: 4 VGLKPVEIPEGVELKLDNNTVTVKGPKGELSREL-HPDMKIN-IEDNVLTVER 54
>UniRef50_Q8A491 Cluster: 50S ribosomal protein L6; n=34;
Bacteria|Rep: 50S ribosomal protein L6 - Bacteroides
thetaiotaomicron
Length = 189
Score = 33.5 bits (73), Expect = 4.2
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +3
Query: 57 VKIPDGLTVHVKSRLVTVKGPRGVLKR 137
+ IP G+TV +K +VTVKGP+G L +
Sbjct: 9 ISIPAGVTVTLKDDVVTVKGPKGELSQ 35
>UniRef50_A5GIT1 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain WH7803)
Length = 179
Score = 33.1 bits (72), Expect = 5.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 42 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKR 137
+ + IPD ++V + VTVKGP+G LKR
Sbjct: 4 IGKSPIPIPDKVSVSLDGLAVTVKGPKGELKR 35
>UniRef50_UPI0000F2B3FB Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 490
Score = 32.7 bits (71), Expect = 7.3
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = -3
Query: 396 LLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLIMFLHVNRLSSRRQAP 217
LL+ + K + + L +VTQL+ +Y++ +LY P VTPL + L + R Q P
Sbjct: 187 LLLALAGKTSKAHVGSLLWIVTQLLFGNSYSSLLLYLDPRVTPLELLLASLSGAKRAQDP 246
Query: 216 FWIRTIS 196
+ +S
Sbjct: 247 TQSKQVS 253
>UniRef50_A5LSZ6 Cluster: 50S ribosomal protein L6; n=1;
Streptococcus pneumoniae SP9-BS68|Rep: 50S ribosomal
protein L6 - Streptococcus pneumoniae SP9-BS68
Length = 139
Score = 32.7 bits (71), Expect = 7.3
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3
Query: 42 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM 170
+ N+ + +P G+ + +VTVKGP+G L R F ++IR+
Sbjct: 4 IGNKVIVLPAGVELANNDNVVTVKGPKGELTREFSK-DIEIRV 45
>UniRef50_Q0ID19 Cluster: 50S ribosomal protein L6; n=6;
Bacteria|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain CC9311)
Length = 179
Score = 32.7 bits (71), Expect = 7.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 42 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKR 137
+ + IPD + V + VTVKGP+G LKR
Sbjct: 4 IGKNPIPIPDKVNVTLSGLAVTVKGPKGELKR 35
>UniRef50_A0UVM0 Cluster: Signal peptidase I precursor; n=2;
Clostridium|Rep: Signal peptidase I precursor -
Clostridium cellulolyticum H10
Length = 189
Score = 32.3 bits (70), Expect = 9.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 291 YWKPLVTPLIMFLHVNRLSSRRQAPFWIRTISQPSGDE 178
+W ++ PL + V+R S Q FW++ + +GDE
Sbjct: 80 FWDNVIDPLKYNILVSRFSDNNQQVFWVKRVIGKAGDE 117
>UniRef50_Q5FM76 Cluster: 50S ribosomal protein L6; n=10;
Firmicutes|Rep: 50S ribosomal protein L6 - Lactobacillus
acidophilus
Length = 176
Score = 32.3 bits (70), Expect = 9.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 57 VKIPDGLTVHVKSRLVTVKGPRGVLKRNF 143
+++PD +TV + +TVKGP+G L R F
Sbjct: 9 IEVPDSVTVTKEGDNITVKGPKGELTRYF 37
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,674,626
Number of Sequences: 1657284
Number of extensions: 12769983
Number of successful extensions: 32247
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 31216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32223
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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