Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30638
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   113   1e-26
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   113   3e-26
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   2.2  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   2.2  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   3.8  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   3.8  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   6.7  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   8.9  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    25   8.9  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  113 bits (273), Expect = 1e-26
 Identities = 56/90 (62%), Positives = 67/90 (74%)
 Frame = +2

Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
           NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S 
Sbjct: 77  NMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISS 136

Query: 437 KQKDELIIEGNSLEDVSSSAALIQNLLQSR 526
             KDE+IIEGNSLE+VS SAA I+ +   R
Sbjct: 137 AVKDEIIIEGNSLENVSQSAANIKQICNVR 166



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 29/72 (40%), Positives = 48/72 (66%)
 Frame = +3

Query: 33  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 212
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61

Query: 213 KKELAAVRTVCS 248
           +K  A +RT  S
Sbjct: 62  RKHNACIRTAYS 73



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +1

Query: 520 VKNKDIRKFLDGLYVSEKTTV 582
           V+NKDIRKFLDG+YVSE+  +
Sbjct: 165 VRNKDIRKFLDGIYVSERGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  113 bits (271), Expect = 3e-26
 Identities = 55/90 (61%), Positives = 67/90 (74%)
 Frame = +2

Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
           NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S 
Sbjct: 77  NMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISS 136

Query: 437 KQKDELIIEGNSLEDVSSSAALIQNLLQSR 526
             KDE+I+EGNSLE+VS SAA I+ +   R
Sbjct: 137 AVKDEIILEGNSLENVSQSAANIKQICNVR 166



 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 28/72 (38%), Positives = 46/72 (63%)
 Frame = +3

Query: 33  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 212
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61

Query: 213 KKELAAVRTVCS 248
           +K  A +R+V S
Sbjct: 62  RKHNACIRSVYS 73



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +1

Query: 520 VKNKDIRKFLDGLYVSEKTTV 582
           V+NKDIRKFLDG+YVSE+  +
Sbjct: 165 VRNKDIRKFLDGIYVSERGNI 185


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 428 NSPKQKDELIIEGNSLEDVSSSAALIQNLLQSRIRISESSWMVF 559
           N PK+  E+ + GN++      A ++ N+L     + E +W  F
Sbjct: 121 NDPKKVFEIALNGNTILGGILVAYILYNVLSPNANMQEITWQDF 164


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 612 YLMFLYVI*HNSCFLRYIKTIQELSDILILD 520
           Y  F++ + H S  L Y KT++E++ + I+D
Sbjct: 788 YYEFIHSL-HQSSLLPYFKTLKEIAHLFIID 817


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -2

Query: 313 SIHSTHLVLEAFSYSFNHVLTCEQTVLTAASSFLDPNHFSTFRRRGF 173
           S  S H ++E   +  +HV+ C  + +    + LDP+ F    R+ +
Sbjct: 86  SYESVHSMIERLPFCPDHVVHCAGSCIPGFFTELDPSVFEKQMRQNY 132


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 242 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 96
           D P+G     GS  F+      V+H+N N+   ++  +N     N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 236 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 114
           PH GK    S   +N  E+R   A+V+S   + PF    GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 226 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 116
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +3

Query: 60   KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 227
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L + E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 228  AVRTVCS 248
             + T+CS
Sbjct: 1623 VLATICS 1629


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 257 SYM*TDCPHGGKLLFGSEP 201
           SY+  DC HGG+L    EP
Sbjct: 35  SYVFRDCDHGGRLFGLQEP 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,237
Number of Sequences: 5004
Number of extensions: 55716
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)