Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30638
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 95 4e-20
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 28 5.4
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 28 5.4
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 28 5.4
SB_38366| Best HMM Match : Sar8_2 (HMM E-Value=4.1) 28 7.1
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 28 7.1
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 7.1
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 95.1 bits (226), Expect = 4e-20
Identities = 43/89 (48%), Positives = 62/89 (69%)
Frame = +3
Query: 3 GSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR 182
GSC+ MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++ V
Sbjct: 548 GSCLSCIVAMKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKD 607
Query: 183 LLKVEKWFGSKKELAAVRTVCSHVRT*LK 269
++V+ WF S+KELA V+T+ +H+ +K
Sbjct: 608 KVRVDVWFASRKELACVKTIITHIENMIK 636
Score = 84.6 bits (200), Expect = 6e-17
Identities = 35/53 (66%), Positives = 44/53 (83%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 412
+NMIKGV G++YKMRAVYAHFPIN E +++E+RNFLGEKY+RRV+M P
Sbjct: 632 ENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +1
Query: 508 ESTTVKNKDIRKFLDGLYVSEKTTVV 585
+ST VKNKDIRKFLDG+YVSEKTT+V
Sbjct: 6 QSTKVKNKDIRKFLDGVYVSEKTTIV 31
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 443 KDELIIEGNSLEDVSSSAALIQNLLQSRIRISESSWMVFMYLRKQ 577
K++ + EGNS +D L+Q LL IRI +W + LR +
Sbjct: 956 KEQQVFEGNSDQDTVVINDLVQPLLTQHIRICPKTWNEQIALRAE 1000
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 191 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 99
L TR+ + V+S EV E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 244 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 101
QT++T A F D RRR F+ +S C + L R+P P++ T
Sbjct: 85 QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 12 VKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 125
++ + +K++ + K K DG+ VH K+ TV+ PRG
Sbjct: 98 LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 60 KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 194
K+ DGL VH+ ++ V K P+ + KR + L A+ I + +P + KV
Sbjct: 4 KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -1
Query: 182 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 72
TR YH NV VF V F S G N HQ + DR+P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_38366| Best HMM Match : Sar8_2 (HMM E-Value=4.1)
Length = 129
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 268 FNHVLTCEQTVLTAASSFLDPNHFSTFRRRGF-TMRMSTAKCLKFLLRTPRGPLTVT 101
F +L V+ S F P+H FR GF +R+S +K++ + + + +T
Sbjct: 9 FRLILILSLLVVFVTSIFACPSHQHDFREEGFGVVRISVRSSVKWITKEKKSLIGIT 65
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 44 SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 151
S+ ++ R Y PC I SG++ APR +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 468 LPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIE 349
+P I S G+L +T G I T PKKL +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 87 VKSRLVTVKGPRGVLKRNFKHL 152
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 498 AAELETSSKELPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIEL 346
AAE++TS L + S S C VT IFT MY P+++ ++ L
Sbjct: 234 AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284
>SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = -3
Query: 405 IFTLLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLIMFLHVNRLSSRR 226
IF+ + ++P+K + +I+ LP + + A L WKP L L + S
Sbjct: 18 IFSRVSGYTPRKRKTAILALPFLARPKWRPFGFVAFPLRWKPTERLLRRLLGLAARDSNN 77
Query: 225 QAPFWIRTISQPSGDEGLPC 166
+ I P GD PC
Sbjct: 78 TSVLPI----APGGDTADPC 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,911,863
Number of Sequences: 59808
Number of extensions: 415153
Number of successful extensions: 1132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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