Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30638
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 113 1e-25
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 30 1.5
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 28 6.2
Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 27 8.2
DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin p... 27 8.2
AF003385-2|AAB54249.1| 773|Caenorhabditis elegans Hypothetical ... 27 8.2
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 113 bits (271), Expect = 1e-25
Identities = 52/85 (61%), Positives = 64/85 (75%)
Frame = +2
Query: 254 KNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 433
KNMIKGVT GF+YKMR+VYAHFPIN +GN +EIRNFLGEK +RRV + GV S
Sbjct: 76 KNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATIS 135
Query: 434 PKQKDELIIEGNSLEDVSSSAALIQ 508
QKDE+++EGN ++ VS +AA IQ
Sbjct: 136 TAQKDEIVVEGNDVQFVSQAAARIQ 160
Score = 91.1 bits (216), Expect = 6e-19
Identities = 38/80 (47%), Positives = 58/80 (72%)
Frame = +3
Query: 30 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 209
MK I +N V P+G+T VK+R+V V GPRG ++++F+HL +++ + L+V KWFG
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60
Query: 210 SKKELAAVRTVCSHVRT*LK 269
+KELAA+RTVCSH++ +K
Sbjct: 61 VRKELAAIRTVCSHIKNMIK 80
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +1
Query: 508 ESTTVKNKDIRKFLDGLYVSEKTTVVLDD 594
+ST VK KDIRKFLDG+YVSEKTT+V D
Sbjct: 161 QSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 594 VI*HNSCFLRYIKTIQELSDILILDCSRF 508
++ HN +L + KT L DIL+ +CS+F
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSKF 208
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +2
Query: 272 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 409
++ F Y + +++ FPI C+ + I+ + +G Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130
>Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical
protein R06C7.4 protein.
Length = 292
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 531 LILDCSRF*MRAAELETSSKELPSMISSSFCFGE 430
++LD +R + E ET + + +SS+ C+G+
Sbjct: 164 MVLDSARLSLNETETETGTSAPATCVSSAVCYGD 197
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 412 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 278
RC L ++F + +T LNN + + GD +++ + S VL F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 158 NSQVFEVPFENSAGPFNCHQTRFHMDR 78
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 158 NSQVFEVPFENSAGPFNCHQTRFHMDR 78
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin
proteoglycan-3 protein.
Length = 292
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 531 LILDCSRF*MRAAELETSSKELPSMISSSFCFGE 430
++LD +R + E ET + + +SS+ C+G+
Sbjct: 164 MVLDSARLSLNETETETGTSAPATCVSSAVCYGD 197
>AF003385-2|AAB54249.1| 773|Caenorhabditis elegans Hypothetical
protein R08F11.7 protein.
Length = 773
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +2
Query: 248 TCKNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG-EKYIRRVKMAPGVTV 424
TC+ K + ++R++ + T+ NS+ IR LG Y ++ +V
Sbjct: 190 TCQGPPKSCSDPVHDRIRSITGYCNNRGKPTQANSVTAIRRLLGTTSYTDGLQAIRNTSV 249
Query: 425 VNSPKQKDELIIEGNSLEDVSSS 493
SP LI N L D S+
Sbjct: 250 TGSPLPSTRLI--SNKLHDEGST 270
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,753,783
Number of Sequences: 27780
Number of extensions: 314600
Number of successful extensions: 841
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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