Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30638
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   106   1e-23
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   106   1e-23
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   105   2e-23
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    29   3.3  
At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR ...    28   4.4  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    28   5.8  
At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR ...    28   5.8  
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    27   7.7  
At4g20940.1 68417.m03034 leucine-rich repeat family protein cont...    27   7.7  

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  106 bits (255), Expect = 1e-23
 Identities = 50/83 (60%), Positives = 62/83 (74%)
 Frame = +2

Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
           N+I GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S 
Sbjct: 82  NLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSE 141

Query: 437 KQKDELIIEGNSLEDVSSSAALI 505
           K KDE++++GN +E VS S ALI
Sbjct: 142 KVKDEIVLDGNDIELVSRSCALI 164



 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 32/80 (40%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
 Frame = +3

Query: 30  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 194
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 195 EKWFGSKKELAAVRTVCSHV 254
           + WFG++K  A++RT  SHV
Sbjct: 61  DSWFGTRKTSASIRTALSHV 80



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +1

Query: 493 CCSHSESTTVKNKDIRKFLDGLYVSEKTTVVLDD 594
           C   ++   VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 161 CALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  106 bits (255), Expect = 1e-23
 Identities = 50/83 (60%), Positives = 62/83 (74%)
 Frame = +2

Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
           N+I GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S 
Sbjct: 82  NLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSE 141

Query: 437 KQKDELIIEGNSLEDVSSSAALI 505
           K KDE++++GN +E VS S ALI
Sbjct: 142 KVKDEIVLDGNDIELVSRSCALI 164



 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 32/80 (40%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
 Frame = +3

Query: 30  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 194
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 195 EKWFGSKKELAAVRTVCSHV 254
           + WFG++K  A++RT  SHV
Sbjct: 61  DSWFGTRKTSASIRTALSHV 80



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +1

Query: 493 CCSHSESTTVKNKDIRKFLDGLYVSEKTTVVLDD 594
           C   ++   VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 161 CALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  105 bits (253), Expect = 2e-23
 Identities = 51/83 (61%), Positives = 61/83 (73%)
 Frame = +2

Query: 257 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 436
           N+I GVT+GF Y+MR VYAHFPIN      N  IEIRNFLGEK +R+V+M  GV +V S 
Sbjct: 82  NLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSE 141

Query: 437 KQKDELIIEGNSLEDVSSSAALI 505
           K KDE+I+EGN +E VS S ALI
Sbjct: 142 KVKDEIILEGNDIELVSRSCALI 164



 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 34/80 (42%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
 Frame = +3

Query: 30  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 194
           MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK+
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 195 EKWFGSKKELAAVRTVCSHV 254
           + WFGS+K  A++RT  SHV
Sbjct: 61  DSWFGSRKTSASIRTALSHV 80



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +1

Query: 493 CCSHSESTTVKNKDIRKFLDGLYVSEKTTVVLDD 594
           C   ++   VK KDIRKFLDG+YVSEK  + +++
Sbjct: 161 CALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/64 (21%), Positives = 32/64 (50%)
 Frame = +3

Query: 3   GSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR 182
           G  +    + K     +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P 
Sbjct: 188 GIAIPHHKDEKDENKTKELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPT 247

Query: 183 LLKV 194
           L  V
Sbjct: 248 LFNV 251


>At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 885

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 294 LYWKPLVTPLIMFLHVNRLSSRRQAPF 214
           +YW PL  P++ +L + R    R+ PF
Sbjct: 795 IYWTPLPFPVLEYLVIRRCPELRRLPF 821


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 465 PSMISS-SFCFGELTTVTPGAI 403
           PS+IS+ S  FG +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


>At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 894

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 300 RILYWKPLVTPLIMFLHVNRLSSRRQAP 217
           R +YW+PL  P +  +H+ +    R+ P
Sbjct: 814 RSIYWQPLSFPCLKTIHITKCPELRKLP 841


>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1107

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +2

Query: 377 GEKYIRRVKMAPGVTVVNSPKQKDELI-IEGNSLEDVSSSAALIQNLLQSRIRISESSWM 553
           G+K    +++A     + SP+ K +L+ I+G + EDVS S  L + LL  RI  SE   +
Sbjct: 637 GDKQNTAIQIALSCNFI-SPEPKGQLLMIDGKTEEDVSRS--LERVLLTMRITASEPKDV 693

Query: 554 VFM 562
            F+
Sbjct: 694 AFV 696


>At4g20940.1 68417.m03034 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat receptor-like protein kinase INRPK1 [Ipomoea nil]
           gi|14495542|gb|AAB36558
          Length = 977

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -3

Query: 528 ILDCSRF*MRAAELETSSKELPSMISSSFCFG 433
           ILD      RA EL  S K LPS  S  + FG
Sbjct: 856 ILDAGILGYRAPELAASRKPLPSFKSDVYAFG 887


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,024
Number of Sequences: 28952
Number of extensions: 289538
Number of successful extensions: 762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)