Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30636
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 95 4e-20
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 84 1e-16
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 69 4e-12
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 60 1e-09
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 54 2e-07
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 33 0.25
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 30 1.7
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251... 30 2.3
02_03_0192 - 16204575-16204582,16204798-16204966,16205708-162057... 28 9.3
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 95.5 bits (227), Expect = 4e-20
Identities = 64/174 (36%), Positives = 92/174 (52%), Gaps = 19/174 (10%)
Frame = +3
Query: 255 DVPPVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIE------------------FLHR 380
D V+ +P HYL ++R GV +A + E+ PL IE FL R
Sbjct: 44 DASKVVVSPTHYLFQVYRNGVTFLACTQVEMPPLLAIEVLTFALFYGSVNMICDFQFLSR 103
Query: 381 VVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNGFPLATESKY*KN*LNHQIF*EQLPI 560
V D DY D E IIK+N+V+VY++LDEM+DNGFPL TE N L I P
Sbjct: 104 VADVLTDYLGDLNEDIIKDNFVLVYQILDEMMDNGFPLTTE----PNILKEMI---APPN 156
Query: 561 LLQENQMYPLHFRLDSCQMYL-GRRSGVKYANNEAYFDVVEEVDAIIDKSGATV 719
++ + L+ D+ ++ R + VK A+NE Y ++VEE+DA +++ GA V
Sbjct: 157 IVSK----MLNVVTDAAASFVPWRTTVVKDASNEVYVNIVEELDACVNREGALV 206
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 509 ILKELIKPPNILRTIANTVT 568
ILKE+I PPNI+ + N VT
Sbjct: 147 ILKEMIAPPNIVSKMLNVVT 166
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 83.8 bits (198), Expect = 1e-16
Identities = 46/144 (31%), Positives = 75/144 (52%)
Frame = +3
Query: 300 IHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLD 479
I V L+ +Q ++ FLHRVVD F+ YF + E +++N+VVVYELLDEM+D
Sbjct: 64 IQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMD 123
Query: 480 NGFPLATESKY*KN*LNHQIF*EQLPILLQENQMYPLHFRLDSCQMYLGRRSGVKYANNE 659
G+P TE+K + + ++ +Q P+ R G++Y NE
Sbjct: 124 FGYPQYTEAKILSEFIKTDAY------RMEVSQRPPMAV----TNAVSWRSEGIRYKKNE 173
Query: 660 AYFDVVEEVDAIIDKSGATVNAGI 731
+ DVVE V+ +++ +G V + +
Sbjct: 174 VFLDVVESVNILVNSNGQIVRSDV 197
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 68.9 bits (161), Expect = 4e-12
Identities = 31/69 (44%), Positives = 44/69 (63%)
Frame = +3
Query: 300 IHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLD 479
I V L+ +Q ++ FLHRVVD F+ YF + E +++N+VVVYELLDEM+D
Sbjct: 65 IQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMD 124
Query: 480 NGFPLATES 506
G+P TE+
Sbjct: 125 FGYPQYTEA 133
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/112 (30%), Positives = 57/112 (50%)
Frame = +3
Query: 255 DVPPVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIK 434
+ PPV I + G+ V V+P ++E L R+ +DY E ++
Sbjct: 46 EAPPVFNVDGVNYIHVKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLR 105
Query: 435 ENYVVVYELLDEMLDNGFPLATESKY*KN*LNHQIF*EQLPILLQENQMYPL 590
+N+++VYELLDE++D G+P T ++ L IF E PI++ ++ PL
Sbjct: 106 KNFILVYELLDEVIDFGYPQTTSTEV----LKSYIFNE--PIMVDAGRLPPL 151
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 53.6 bits (123), Expect = 2e-07
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Frame = +3
Query: 315 VALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDC-TETIIKENYVVVYELLDEMLDNGFP 491
V +V V +F+ V F+ YF E I+ N+V++YELLDE++D G+P
Sbjct: 66 VYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYP 125
Query: 492 LATESKY*KN*LNHQIF*EQLPILLQENQMYPLHFRLDSCQMYLGRRSGVKYANNEAYFD 671
+ K + + + P + + + L RR G+ Y NE + D
Sbjct: 126 QNLSPEILKLYITQEGV--RSPFSSKPSDKPVPNATLQVTGAVGWRREGLMYKKNEVFLD 183
Query: 672 VVEEVDAIIDKSGATVNAGI 731
+VE V+ ++ G+ + +
Sbjct: 184 IVESVNLLMSSKGSVLRCDV 203
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +3
Query: 354 LFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNGFPLATESK 509
L ++EF+H +V+T +F + E I + V+ +L+EM+ NG + T +
Sbjct: 79 LAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQ 130
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 354 LFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNG 485
L V+E +H V+ YF E + N+ Y +LDE+L G
Sbjct: 189 LEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIAG 232
>08_02_1063 +
24024030-24024506,24024803-24024856,24024965-24025118,
24025314-24025388,24025511-24025788,24026023-24026253,
24026522-24026620,24026740-24026889,24027830-24027976,
24028525-24028575,24028647-24028819,24029018-24029147,
24029361-24029458,24029655-24029892,24030634-24030837,
24031003-24031083,24031296-24031535
Length = 959
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 201 DPSFSM*LLFGSTESIT*DVPPVLAAPHHYLISIHRGGVA 320
DP+ + L + S + P +LA+PHH+L+S RG A
Sbjct: 2 DPAAPLLALSKAISSSSRSKPSLLASPHHFLLSRGRGSGA 41
>02_03_0192 -
16204575-16204582,16204798-16204966,16205708-16205785,
16206442-16206567,16206723-16206968,16207368-16207487,
16207947-16208198,16208441-16208517,16208581-16208680,
16210071-16210511
Length = 538
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -1
Query: 507 YFPWPVGSHYLTFHPIIHTPPHNFL*LLSQCNLKSSPEK 391
YF WP HY H I ++ + L SPE+
Sbjct: 401 YFTWPTVEHYYQAHKFIGVDDPQAREIVQEIKLAKSPEE 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,094,905
Number of Sequences: 37544
Number of extensions: 410088
Number of successful extensions: 994
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -