Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30636
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44) 83 3e-16
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20) 72 6e-13
SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_1547| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_7873| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0) 28 9.5
>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
Length = 331
Score = 82.6 bits (195), Expect = 3e-16
Identities = 51/156 (32%), Positives = 73/156 (46%)
Frame = +3
Query: 264 PVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENY 443
PV I +G V + AV +Q V V EFL R VD YF TE IK N+
Sbjct: 46 PVTNIARTSFFHIRQGNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKVTEEGIKNNF 105
Query: 444 VVVYELLDEMLDNGFPLATESKY*KN*LNHQIF*EQLPILLQENQMYPLHFRLDSCQMYL 623
V++YELLDE+ D G+P T++ K + Q + +E Q
Sbjct: 106 VLIYELLDEIADYGYPQKTDTAILKTFITQQ----GVKTQTREEQ---AQITSQVTGQIG 158
Query: 624 GRRSGVKYANNEAYFDVVEEVDAIIDKSGATVNAGI 731
RR G+KY NE + DV+E V+ ++ G ++A +
Sbjct: 159 WRRDGIKYRRNELFLDVLESVNLLMSPQGQVLSAHV 194
>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
Length = 216
Score = 71.7 bits (168), Expect = 6e-13
Identities = 43/137 (31%), Positives = 67/137 (48%)
Frame = +3
Query: 321 LVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNGFPLAT 500
+V K+ + FLHR+V F DYF + E I++N+V++YEL+DE++D G+P T
Sbjct: 12 VVCTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFGYPQFT 71
Query: 501 ESKY*KN*LNHQIF*EQLPILLQENQMYPLHFRLDSCQMYLGRRSGVKYANNEAYFDVVE 680
E+K L I E + L L R +KY NE + DV+E
Sbjct: 72 ETKI----LQEYITQEGHKLELAPKPPPAL------TNAVSWRGDNIKYRKNEVFLDVIE 121
Query: 681 EVDAIIDKSGATVNAGI 731
V+ ++ SG + + I
Sbjct: 122 SVNLMVSSSGNVLRSEI 138
>SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 56.4 bits (130), Expect = 2e-08
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 15/98 (15%)
Frame = +3
Query: 255 DVPPVLAAPHHYLISIHRGGVALVAVCKQEV-----------APLFVIEFLHRVVDTF-- 395
DVPPV++ PH+YLISI+R + V V + E PL + R F
Sbjct: 47 DVPPVISTPHYYLISIYRNHLFFVGVVQSEAWQNGYQICFSGEPLSERDLYRRHNGNFFS 106
Query: 396 --QDYFSDCTETIIKENYVVVYELLDEMLDNGFPLATE 503
+ +D K+ V + +LL+EMLDNGFPLATE
Sbjct: 107 VVTEVGTDLRRACNKKGAVYILQLLEEMLDNGFPLATE 144
Score = 45.6 bits (103), Expect = 4e-05
Identities = 16/24 (66%), Positives = 22/24 (91%)
Frame = +1
Query: 169 DVFLEKHWRSVIPRSVCDYYLEAQ 240
D+F+EKHW+SVI RS+CD++ EAQ
Sbjct: 16 DIFVEKHWKSVINRSICDHFFEAQ 39
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +2
Query: 509 ILKELIKPPNILRTIANTVTGKS 577
+LKELI+PP+I+R + NTVTG S
Sbjct: 147 VLKELIRPPSIVRQVVNTVTGSS 169
>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +3
Query: 330 VCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNGFPLATESK 509
+ KQ + F+ +H V + +DY E IK N ++YELLDE+LD G+ AT ++
Sbjct: 3 IYKQAIITFFLC--VHWVCNLCKDYCGIINEEAIKCNLPLIYELLDEVLDFGYVQATSTE 60
>SB_1547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +2
Query: 509 ILKELIKPPNILRTIANTVTGKS 577
+LKELI+PP+I+R + NTVTG S
Sbjct: 46 VLKELIRPPSIVRQVVNTVTGSS 68
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 459 LLDEMLDNGFPLATE 503
LL+EMLDNGFPLATE
Sbjct: 29 LLEEMLDNGFPLATE 43
>SB_7873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 663 YFDVVEEVDAIIDKSGAT 716
YFDV+EE+D IID+ G +
Sbjct: 2 YFDVIEEIDCIIDRHGGS 19
>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 2497
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 163 SGDVFLEKH-WRSVIPRSVCDYYLEAQRAS 249
S + F + H W SV+ RS C+++ QRA+
Sbjct: 1437 SANDFADDHLWVSVVARSPCNFFSRVQRAT 1466
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,350,286
Number of Sequences: 59808
Number of extensions: 474727
Number of successful extensions: 915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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