Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30635
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   118   1e-27
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   117   1e-27
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy...    28   1.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.4  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   7.7  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  118 bits (283), Expect = 1e-27
 Identities = 50/85 (58%), Positives = 66/85 (77%)
 Frame = +1

Query: 1   LRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXX 180
           L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE  
Sbjct: 171 LKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIV 230

Query: 181 XXXXXXXXXXAPGGHLGRFVIWTQS 255
                     APGGHLGRFVIWT+S
Sbjct: 231 NVRRLNLLQLAPGGHLGRFVIWTKS 255



 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
 Frame = +3

Query: 255 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-T 428
           AFG LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  
Sbjct: 256 AFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHV 315

Query: 429 RKLNPLTNNKAMLKLNPYAAVLK 497
           +K NPL N   + +LNPYA   K
Sbjct: 316 QKKNPLKNKAVLSRLNPYAKAYK 338


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  117 bits (282), Expect = 1e-27
 Identities = 50/85 (58%), Positives = 66/85 (77%)
 Frame = +1

Query: 1   LRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXX 180
           L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE  
Sbjct: 171 LKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIV 230

Query: 181 XXXXXXXXXXAPGGHLGRFVIWTQS 255
                     APGGHLGRFVIWT+S
Sbjct: 231 NVRRLNLLQLAPGGHLGRFVIWTKS 255



 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
 Frame = +3

Query: 255 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-T 428
           AFG LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  
Sbjct: 256 AFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHV 315

Query: 429 RKLNPLTNNKAMLKLNPYAAVLK 497
           +K NPL N   + +LNPYA   K
Sbjct: 316 QKKNPLKNKAVLARLNPYAKAYK 338


>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 152

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 218 EAILDVSSSGLSRIRQA*PLIRVMEDTIKTKEELQPAPTEDGQH*PHTSS 367
           E +  + S    R+  +   ++  ED++KTK ELQ A  +  ++ P TS+
Sbjct: 65  EIVKPILSKAFQRLEDSISSLQRQEDSLKTKYELQEARLDMLKNRPATSA 114


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 303 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 479
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 485 RVRIEFQHRLVISEWVQFACSTDHAFVGSTEDLPDLIRL 369
           + ++ F H L + +WV+ +       +G   + PD +RL
Sbjct: 171 KYKVLFYHSLNLRDWVKLSEFGSAGVLGYQYECPDFVRL 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,799
Number of Sequences: 5004
Number of extensions: 47163
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)