Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30635
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 91 8e-19
07_01_0578 + 4295386-4296489,4297394-4297507 90 1e-18
05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244... 29 3.4
11_01_0127 + 1031690-1031952,1032850-1032857,1034679-1034927,103... 29 4.5
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470... 28 6.0
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730... 28 7.9
02_04_0073 - 19471254-19472681 28 7.9
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 28 7.9
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 91.1 bits (216), Expect = 8e-19
Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 LRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGVEX 177
L+++ A++D K S +RAGKGKMRNRR I RKGPLI++ + + +AFRN+PGV+
Sbjct: 174 LKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDV 233
Query: 178 XXXXXXXXXXXAPGGHLGRFVIWTQ 252
APGGHLGRFVIWT+
Sbjct: 234 ANVERLNLLDLAPGGHLGRFVIWTE 258
Score = 85.0 bits (201), Expect = 5e-17
Identities = 40/86 (46%), Positives = 58/86 (67%)
Frame = +3
Query: 255 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRK 434
AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++ NK V +
Sbjct: 260 AFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREAR 319
Query: 435 LNPLTNNKAMLKLNPYAAVLKEESYL 512
NPL N A+LKLNPY ++ + L
Sbjct: 320 RNPLKNVAAVLKLNPYFGTARKMAAL 345
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 90.2 bits (214), Expect = 1e-18
Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 LRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEX 177
L+++ A++D K S +R GKGKMRNRR I RKGPLI++ + + +AFRN+PGV+
Sbjct: 175 LKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDV 234
Query: 178 XXXXXXXXXXXAPGGHLGRFVIWTQS 255
APGGHLGRFVIWT+S
Sbjct: 235 ANVERLNLLDLAPGGHLGRFVIWTES 260
Score = 86.2 bits (204), Expect = 2e-17
Identities = 43/98 (43%), Positives = 65/98 (66%), Gaps = 6/98 (6%)
Frame = +3
Query: 255 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRK 434
AF +L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++ NK V R ++
Sbjct: 261 AFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKR 320
Query: 435 LNPLTNNKAMLKLNPY------AAVLKEESYLELRRRK 530
NPL N A+LKLNPY A L E + ++ R+ K
Sbjct: 321 KNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEK 358
>05_06_0238 -
26621843-26622457,26622625-26623375,26624372-26624418,
26624632-26624740,26624969-26625050,26625164-26625248,
26625320-26625439,26625735-26625800,26625994-26626041,
26626148-26626196,26626576-26626613
Length = 669
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +3
Query: 366 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKEESYLELRRRKNLK 539
L D +R++LR N R R L L L A +L + YLELRRR K
Sbjct: 217 LPDDVLREILRRVNSRAALGKRWAG-LARELPSLDLR-VADILPRDYYLELRRRDEAK 272
>11_01_0127 +
1031690-1031952,1032850-1032857,1034679-1034927,
1034938-1035009,1036609-1036724,1037482-1037545,
1037742-1037773,1037804-1037850,1038627-1038660,
1039308-1039652,1040425-1040718,1040968-1041232,
1041359-1041480,1041754-1042059
Length = 738
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 477 PYAAVLKEESYLELRRRKNLKGFLLMPRRVD*SCLSENPRYERLRNYG 620
P+ + E+ RRR KG PRR S + + R ERL G
Sbjct: 43 PWGRATRAEALPHRRRRLGCKGLCRRPRRAPPSAVEKLRRLERLGRIG 90
>03_01_0643 -
4708245-4708355,4708456-4708800,4709124-4709700,
4709780-4710462,4710618-4710980,4712199-4712530,
4712856-4713048,4713748-4713790,4713964-4714052,
4714186-4714301,4714816-4714935,4715538-4715577
Length = 1003
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = +3
Query: 366 LKSDEIRKVLRAPNKRVIRATRKLNPLTNN----KAMLKL---NPYAAVLKEESYLELRR 524
++ DEI+ L P K +I ++K++ L N +LKL N A K++ +L+ R
Sbjct: 530 VEQDEIQTTLSNPTKEIIDLSKKISSLMMNNDDWSELLKLADDNEPATDDKQDQFLQNRI 589
Query: 525 RKNLKGFLL 551
++ L +LL
Sbjct: 590 KEKLHIWLL 598
>08_02_1476 -
27372288-27372310,27372508-27372586,27372818-27373085,
27373346-27373410,27373611-27373757
Length = 193
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 242 MTKRPRWPPGASFRRFSLLTFRSSTPGMLRK 150
M RP WP AS R S+ R PG R+
Sbjct: 1 MAARPSWPSTASCRSRSVAYLRQQPPGHRRR 31
>02_04_0073 - 19471254-19472681
Length = 475
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 217 GGHLGRFVIWTQSHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMR 381
GG G + T G +P S HG HH++++ T N + L V ++R
Sbjct: 9 GGGGGGGLPMTAPRPRGASPLSSHGHHHRSRKIHRTFNNVKITVLCGLVTILVLR 63
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 204 QEVQLVNIQELHTGDVAEGASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDI 25
Q L++++ LH D + L+ED + ++ + T V + +T+ LV+LK
Sbjct: 937 QAENLISLKRLHMVDCQNAKQFRMCLLEDQQLAVDVVTVVVESRVARAKETVVLVYLKCY 996
Query: 24 R 22
R
Sbjct: 997 R 997
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,867,796
Number of Sequences: 37544
Number of extensions: 368635
Number of successful extensions: 1013
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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