Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30635
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                96   3e-20
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_18738| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)                     29   4.6  
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 43/78 (55%), Positives = 54/78 (69%)
 Frame = +1

Query: 1   LRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXX 180
           L+ + A+ D+ K   S+++RAGKGKMRNRR + RKGPLII+N DQGL +AFRN+PGVE  
Sbjct: 168 LKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQ 227

Query: 181 XXXXXXXXXXAPGGHLGR 234
                      PGGHLGR
Sbjct: 228 HVDRLNLLKLCPGGHLGR 245



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 31/81 (38%), Positives = 39/81 (48%)
 Frame = +3

Query: 321 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKE 500
           NLP  ++ + D   LLK      + R P  R  RA  K NPL N   ML+LNPYA   K 
Sbjct: 220 NLPGVELQHVDRLNLLKLCPGGHLGR-PKAR--RAIHKKNPLKNLGTMLRLNPYAKSAKR 276

Query: 501 ESYLELRRRKNLKGFLLMPRR 563
              L + RR+  K   L  +R
Sbjct: 277 AEMLTVERRRAAKEAALAKKR 297


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +3

Query: 294 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 440
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_18738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +3

Query: 312 KNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAV 491
           K  N  +P++  + L  L   D I +    PNK    +T + NP+     ++K  PY  +
Sbjct: 132 KQPNPSKPELVCSSLLSL--QDAINRAAVEPNKT---STTE-NPIERQSFLVKNRPYFTM 185

Query: 492 LKEESYLELRRRKNLKGFLLM-PRRVD*SC 578
           L++    EL+++      ++  P+++D SC
Sbjct: 186 LRKSYDKELKKKAVFLCLIVSNPKKIDESC 215


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 369 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 473
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 964

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -1

Query: 255 RLSPDDETSKMASRSQLQEVQLVNIQELHTGDVAEGASQTLILVED 118
           +L+ D+E   +   + L++V + +   + T  VA G S TL+L+++
Sbjct: 556 KLALDNEDGPVEEVAVLRQVSVPDFNSVGTSSVAMGTSHTLVLLQN 601


>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 141 QTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 49
           Q LIL+  Y   + L+T+++  F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,942,802
Number of Sequences: 59808
Number of extensions: 390940
Number of successful extensions: 1375
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)