Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30635
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   101   4e-22
Z68115-4|CAA92165.2|  206|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    28   5.4  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    28   5.4  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    28   5.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  101 bits (243), Expect = 4e-22
 Identities = 46/85 (54%), Positives = 58/85 (68%)
 Frame = +1

Query: 1   LRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXX 180
           LRR   W+DI KVY S+R RAGKGK+RNR+  Q+ GP++I+ +D    RAFRNIPGV+  
Sbjct: 170 LRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVM 229

Query: 181 XXXXXXXXXXAPGGHLGRFVIWTQS 255
                     APGGHLGR +IWT+S
Sbjct: 230 NVERLNLLKLAPGGHLGRLIIWTES 254



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
 Frame = +3

Query: 255 AFGRLDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATR 431
           AF +LD ++G+    S Q KK +++P P MAN+D +R+++S+E+ K +RAP K  +    
Sbjct: 255 AFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKV 314

Query: 432 KLNPLTNNKAMLKLNPYAAVLKEESYLELRR 524
             NPL     + KLNPYA++L++ S   +++
Sbjct: 315 HRNPLKKRTLLYKLNPYASILRKASKANVKK 345


>Z68115-4|CAA92165.2|  206|Caenorhabditis elegans Hypothetical
           protein F19H6.5 protein.
          Length = 206

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 467 ETQSLRGRAERGKLLRAAQKEELEGLLADAE 559
           + +S + +A RG+  RA+QK  LE ++ DAE
Sbjct: 153 QIKSKKQKALRGRFPRASQKSVLEQIMVDAE 183


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 348 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKEES 506
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L  E+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSREN 601


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 348 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKEES 506
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L  E+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSREN 601


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 348 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKEES 506
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L  E+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSREN 601


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -1

Query: 213 SQLQEVQLVNIQELHTG--DVAEGASQTLILVEDYEGSLTLDTTTVAHFTL 67
           S L+  +   ++ LH    +  E + + L++++ +E + TL  TTVA+F+L
Sbjct: 281 SLLKHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,249,625
Number of Sequences: 27780
Number of extensions: 282180
Number of successful extensions: 839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)