Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30635
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    27   0.22 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.6  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 324 LPQPKMANTDLTRLLKSDEIRKVLRAPNKRV 416
           LP P   N  L  L+ S E+R+  +APN  V
Sbjct: 490 LPPPYRLNKPLMSLITSSEVRQPGKAPNYSV 520


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 573 SCLSENPRYERLRNYGEKE 629
           SC+S   RYE +   G+KE
Sbjct: 61  SCISGRDRYECIEKVGKKE 79


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 573 SCLSENPRYERLRNYGEKE 629
           SC+S   RYE +   G+KE
Sbjct: 61  SCISGRDRYECIEKVGKKE 79


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 573 SCLSENPRYERLRNYGEKE 629
           SC+S   RYE +   G+KE
Sbjct: 61  SCISGRDRYECIEKVGKKE 79


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 253 SHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMRS 384
           +H+ G T    H  HH   +       R+ PTL S  +SS + S
Sbjct: 340 NHTMGPTMGPPHHHHHHQTQSLQHLHYRQPPTL-SESYSSYVNS 382



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 250 QSHSAGLTPYSGHGRHHQNKRRT 318
           Q H +   P+ G   HHQ+   T
Sbjct: 320 QHHPSQYHPHRGSSPHHQHGNHT 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,770
Number of Sequences: 438
Number of extensions: 2891
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)