Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30635
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    93   2e-19
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    92   4e-19
At1g80850.1 68414.m09485 methyladenine glycosylase family protei...    30   1.2  
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea...    28   6.6  
At2g47550.1 68415.m05934 pectinesterase family protein contains ...    28   6.6  
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,...    28   6.6  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 48/114 (42%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
 Frame = +1

Query: 1   LRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEX 177
           L+++ A+ D  K   S  +R GKGKMRNRR I RKGPL++F  +   + +AFRN+PGVE 
Sbjct: 177 LKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVEL 236

Query: 178 XXXXXXXXXXXAPGGHLGRFVIWTQSHSAGLTPYSGHGRHHQNKRRTSTCPNRR 339
                      APGGHLGRFVIWT+S    L    G       K++    P  +
Sbjct: 237 CHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAK 290



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 45/105 (42%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
 Frame = +3

Query: 255 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRK 434
           AF +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDE++ V+        RA  K
Sbjct: 263 AFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLK 322

Query: 435 LNPLTNNKAMLKLNPYAAVLKEESYL-ELRRRKNLKGFLLMPRRV 566
            NPL N   M KLNPYA   K  S L E  R K  K  L   R+V
Sbjct: 323 KNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKV 367


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
 Frame = +1

Query: 1   LRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEX 177
           L+++ A+ D  K   S  +R GKGKMRNRR I RKGPL+++  +   + +AFRN+PGVE 
Sbjct: 176 LKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVEL 235

Query: 178 XXXXXXXXXXXAPGGHLGRFVIWTQSHSAGLTPYSGHGRHHQNKRRTSTCPNRR 339
                      APGGHLGRFVIWT+S    L    G       K++    P  +
Sbjct: 236 CHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAK 289



 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 45/103 (43%), Positives = 61/103 (59%)
 Frame = +3

Query: 255 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRK 434
           AF +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDEI+ V+    K   RA  K
Sbjct: 262 AFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLK 321

Query: 435 LNPLTNNKAMLKLNPYAAVLKEESYLELRRRKNLKGFLLMPRR 563
            NPL N   MLKLNPYA   K  S L   +R   K   L  +R
Sbjct: 322 KNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKR 364


>At1g80850.1 68414.m09485 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 327

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/84 (21%), Positives = 34/84 (40%)
 Frame = +3

Query: 255 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRK 434
           AFG  D    ++      +  F  P+     T    L+  D +R+  R+ +  VI +  +
Sbjct: 242 AFGSFDKYIWNFVNQKPTQSQFRYPRQVPVKTSKAELISKDLVRRGFRSVSPTVIYSFMQ 301

Query: 435 LNPLTNNKAMLKLNPYAAVLKEES 506
              LTN+        +  + K+E+
Sbjct: 302 TAGLTNDHLTCCFRHHDCMTKDET 325


>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
           family protein similar to katanin p80 subunit
           [Strongylocentrotus purpuratus] GI:3005601; contains
           Pfam profile PF00400: WD domain, G-beta repeat
          Length = 871

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 255 RLSPDDETSKMASRSQLQEVQLVNIQELHTGDVAEGAS 142
           R  PD  TS +  RSQ Q ++ + +Q+ +T    EG S
Sbjct: 608 RNEPDLPTSSLLERSQSQPIEPITLQDGNTYPSDEGGS 645


>At2g47550.1 68415.m05934 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 560

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -1

Query: 198 VQLVNIQELHTGDVAEGASQTLILVED--YEGSLTLDTTTVAHFTLTSTKTLRLVHLKDI 25
           + +++ +    G VA  A  T+  +ED  +  SLT+D    +  T  STKTL L   +D+
Sbjct: 78  ISMIDAELDRKGKVA--AKSTVGALEDCKFLASLTMDYLLSSSQTADSTKTLSLSRAEDV 135

Query: 24  RPCLEA 7
              L A
Sbjct: 136 HTFLSA 141


>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
           putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
           amidohydrolase) {Canavalia ensiformis}; contains Pfam
           profile PF01979: Amidohydrolase family
          Length = 838

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 246 DSVAFGRLDPLFG-SWKTPSKQKKNFNLPQPKMANTDLTRL 365
           DS A GR+  +   +W+T  K K       P MA+ D +R+
Sbjct: 631 DSQAMGRIGEVISRTWQTADKMKAQRGAIDPNMADDDNSRI 671


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,816,380
Number of Sequences: 28952
Number of extensions: 273407
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)