Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30634
         (387 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    27   0.086
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   0.80 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   0.80 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   0.80 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   0.80 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   1.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   2.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   4.3  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   5.6  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 26.6 bits (56), Expect = 0.086
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 8   LRPQFPNIVNVLRAIPDVDAHDLQRLEDKLANNTGKPSKIDKSKRDLFKKITSKLIGRN 184
           L+ ++P I   LRA+ D D   +++ E      +GKPS +  +       I S   G N
Sbjct: 90  LKKEYPKIWEQLRAVWDPDDVFIRKFETSF--ESGKPSGVISTNTSPPSPILSNRFGEN 146


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 0.80
 Identities = 12/49 (24%), Positives = 19/49 (38%)
 Frame = +1

Query: 133 EQTRFI*ENHFQVNWSQRGSAVQEGSVHSGSAHGPHGSPADDDTAPPRL 279
           +Q ++   NH   N +   +    G+ +    H  HG P      PP L
Sbjct: 58  QQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPIL 106


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 0.80
 Identities = 12/49 (24%), Positives = 19/49 (38%)
 Frame = +1

Query: 133 EQTRFI*ENHFQVNWSQRGSAVQEGSVHSGSAHGPHGSPADDDTAPPRL 279
           +Q ++   NH   N +   +    G+ +    H  HG P      PP L
Sbjct: 58  QQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPIL 106


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 0.80
 Identities = 12/49 (24%), Positives = 19/49 (38%)
 Frame = +1

Query: 133 EQTRFI*ENHFQVNWSQRGSAVQEGSVHSGSAHGPHGSPADDDTAPPRL 279
           +Q ++   NH   N +   +    G+ +    H  HG P      PP L
Sbjct: 58  QQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPIL 106


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 0.80
 Identities = 12/49 (24%), Positives = 19/49 (38%)
 Frame = +1

Query: 133 EQTRFI*ENHFQVNWSQRGSAVQEGSVHSGSAHGPHGSPADDDTAPPRL 279
           +Q ++   NH   N +   +    G+ +    H  HG P      PP L
Sbjct: 58  QQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPIL 106


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 175 WSQRGSAVQEGSVHSGSAHGP 237
           + +RG +   G  +SG  HGP
Sbjct: 8   FGKRGRSTGRGLKYSGQQHGP 28


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 120 PKSIRANEIYLRKSLPS*LVATWVSCSRRKC 212
           P      E+ L+ +LP   V  W    R KC
Sbjct: 94  PDIFMREEVALKINLPESRVQVWFKNRRAKC 124


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 95  AYLLAAADRVRPHP 54
           A + AAA+ +RPHP
Sbjct: 99  ANMAAAANLLRPHP 112


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +3

Query: 120 PKSIRANEIYLRKSLPS*LVATWVSCSRRKC 212
           P      E+ ++ +LP   V  W    R KC
Sbjct: 152 PDIFMREEVAVKINLPESRVQVWFKNRRAKC 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,412
Number of Sequences: 336
Number of extensions: 1609
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8119573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)