Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30634
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    26   1.8  
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   5.5  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    24   9.6  

>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = -2

Query: 125 FWK--VSRCCWQAYLLAAADRVRPH-PEWHV 42
           FWK  VS C W    + A DR  P  P +H+
Sbjct: 170 FWKDKVSFCLWSHRFIPACDRYAPSIPLYHI 200


>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 43

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 334 CCEYHFVSK*IILIIMF 384
           CCE HF++  + LI +F
Sbjct: 25  CCENHFINPLVCLIALF 41


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 205 GSVHSGSAHGPHG 243
           G  H G  HGPHG
Sbjct: 112 GGGHHGPLHGPHG 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,498,987
Number of Sequences: 5004
Number of extensions: 25624
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)