Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30634
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652 30 0.74
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871... 29 1.3
07_01_0124 - 938612-940098,940643-940748 28 3.0
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 28 3.0
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354... 27 3.9
08_02_0601 + 19177129-19177245,19178231-19179103 27 3.9
03_01_0035 - 322993-323280,323385-323528,324055-324180,324827-32... 27 3.9
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 27 3.9
12_01_0683 + 5821598-5821916,5822348-5822987,5824250-5824329,582... 27 6.9
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674... 27 6.9
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 27 6.9
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 26 9.1
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 26 9.1
>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
Length = 717
Score = 29.9 bits (64), Expect = 0.74
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 178 SQRGSAVQEGSVHSGSAHGPHGSPADDDTAPP 273
++R +A EGS GS H HGSP PP
Sbjct: 177 TRRSAATGEGSHPEGSNHNNHGSPPLPPPPPP 208
>10_08_0854 +
21086253-21086258,21086320-21086480,21087065-21087175,
21087275-21087329,21087796-21087963,21088232-21090082,
21090355-21090690
Length = 895
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 205 GSVHSGSAHGPHGSPADDDTAP-PRLDLL 288
G++ +A G HG P DD+++P P LD L
Sbjct: 711 GTIKVAAAGGAHGLPRDDESSPSPLLDRL 739
>07_01_0124 - 938612-940098,940643-940748
Length = 530
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 68 HDLQRLEDKLANNTGKPSKIDKSKRDLFKKITSKLIGRNVGQLF-KKEVFIVDL 226
H+ +D +N PSK + +KR F +++ K + + Q+F EV I D+
Sbjct: 112 HEADHTKDHEVSNHVIPSKFNPAKRIRFCRVSGKSLEEQLQQVFGSLEVTIEDM 165
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 27.9 bits (59), Expect = 3.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 5 TLRPQFPNIVNVLRAIPDVDAHDLQRLEDKLANNTGKPSKIDKSKRDLFKKITSK-LIGR 181
TLRP N LR I + + L+ ++ N PSKID K +T+K ++ +
Sbjct: 365 TLRPIASGKFNQLRTISIISPTAKEGLQKTVSMNLKPPSKIDLHKSFDENDLTNKPVLAK 424
Query: 182 NV 187
NV
Sbjct: 425 NV 426
>09_06_0187 +
21433842-21433887,21434504-21435246,21435437-21435484,
21435929-21436814,21436967-21437056,21437543-21438417
Length = 895
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 169 VNWSQRGSAVQEGSVHSGSAHGPHG-SPADDDTA 267
V SQ+GS + E H +HG HG S A D T+
Sbjct: 504 VGTSQKGSDLAELHTHGMLSHGGHGSSQAGDQTS 537
>08_02_0601 + 19177129-19177245,19178231-19179103
Length = 329
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 205 GSVHSGSAHGPHGSPADDDTAPPRLDLLFAHTPPT*PTVKSIPCCE 342
G H GS H H + DDD + +DL+ HT T ++ S C +
Sbjct: 278 GLSHGGSGH--HHNDGDDDDSTAAIDLV-THTLTTPRSLLSCSCSD 320
>03_01_0035 -
322993-323280,323385-323528,324055-324180,324827-324882,
325497-325517,327153-327420,327904-329787
Length = 928
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 190 SAVQEGSVHSGSAHGPHGSPADDDTAP-PRLD 282
S + G+V + G HG P DD+T+P P LD
Sbjct: 550 SGLSPGTVKVITPSGLHGLPNDDETSPSPLLD 581
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 241 GSPADDDTAPPRLDLLFAHTPPT*PTVKSI 330
GSPA D PP L F TP + VK++
Sbjct: 733 GSPAQDGAEPPLLHRSFRFTPESIARVKAL 762
>12_01_0683 +
5821598-5821916,5822348-5822987,5824250-5824329,
5825405-5825750,5826237-5826411,5826479-5826524,
5827179-5827384,5827616-5827696
Length = 630
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 187 GSAVQEGSVHSGSAHGPHGSPADDDTAPPRLD 282
GS ++GS++ AH HG DDT+ RL+
Sbjct: 79 GSKHRDGSIYRTDAHYWHGLYHLDDTSETRLE 110
>07_03_1474 -
26766078-26766536,26766634-26766885,26767201-26767401,
26767986-26768156,26768249-26768433,26768526-26768851,
26769430-26770631
Length = 931
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 101 WQAYLLAAADRVRPHPEWH 45
W AYL D RPHP H
Sbjct: 84 WHAYLRERLDHARPHPISH 102
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 92 KLANNTGKPSKIDKSKRDLFKKIT 163
KL +N KP +DK+ DL KK++
Sbjct: 151 KLYDNVTKPVGVDKASGDLIKKLS 174
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 50 IPDVDAHDLQRLEDKLANNTGKPSKIDKSKRDLFKKITSKL 172
IP+ + + + RL+DK ++N G+ K S + +KI+ K+
Sbjct: 519 IPEGERYPVARLDDKKSDNKGEQEK--PSTKTTLRKISIKV 557
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 169 VNWSQRGSAVQEGSVHSGSAHGPHGS 246
+ W+ S++ E S+HS + HG S
Sbjct: 2686 IGWTDDKSSINEQSLHSATEHGAKSS 2711
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,315,955
Number of Sequences: 37544
Number of extensions: 188741
Number of successful extensions: 533
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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