Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30634
         (387 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   6e-05
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)                     28   3.1  
SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 27   4.0  
SB_58865| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-13)       27   4.0  
SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 27   4.0  
SB_22296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  

>SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 17/32 (53%), Positives = 25/32 (78%)
 Frame = +2

Query: 131 KSKRDLFKKITSKLIGRNVGQLFKKEVFIVDL 226
           K +RDLFKK+   +IG+++GQ+FK E+ I DL
Sbjct: 207 KKQRDLFKKVVEPIIGKHIGQMFKNEIKIKDL 238


>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
          Length = 1681

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 93  SLPTTPGNLPKSIRANEIYLRKSLPS*LVATWVSC 197
           SL T PGN+   +R   + L  SLP  +V  W++C
Sbjct: 154 SLTTIPGNMKSLMRPVAMMLPDSLP--VVEVWMTC 186


>SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 512

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 319 QWARWVECARTAGP 278
           +W  W EC++T GP
Sbjct: 275 EWGAWAECSKTCGP 288


>SB_58865| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-13)
          Length = 325

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +2

Query: 23  PNIVNVLRAIPDVDAHDLQRLEDKLANNTGKPSKIDKSKRDLFKKITSKLIGRNVGQLFK 202
           PN V         D H   RL +KLA    + S  D    D F+K+  K I +  G  F 
Sbjct: 175 PNDVLYFHLNQRQDVHKRVRLPEKLARKIRQWSGADVILYDHFRKVFHKKISQETGD-FH 233

Query: 203 KEV 211
            E+
Sbjct: 234 SEI 236


>SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 468

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 319 QWARWVECARTAGP 278
           +W  W EC++T GP
Sbjct: 231 EWGAWAECSKTCGP 244


>SB_22296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +2

Query: 74  LQRLEDKLANNT-GKP---SKIDKSKRDLFKKITSKLIGRN 184
           L+R   K ANN  G+P   S + +S++ + KK+ SK  G+N
Sbjct: 540 LKRPSPKRANNKEGEPAAESPVQRSEKQVLKKLKSKKHGKN 580


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,527,794
Number of Sequences: 59808
Number of extensions: 207683
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)