Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30634
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    27   4.6  
U41279-5|AAK31424.2|  161|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 99  PTTPGNLPKSIRAN--EIYLRKSLPS*LVATWVSCSRRK 209
           P+ PG LPK+ RA    +++  SL + ++A WVS  + K
Sbjct: 8   PSIPGPLPKAERALAWSVWIFHSLFAFVIAYWVSNGKAK 46


>U41279-5|AAK31424.2|  161|Caenorhabditis elegans Hypothetical
           protein C17C3.11 protein.
          Length = 161

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 116 PSKIDKSKRDLFKKITSKLIGRNVGQLFK 202
           P+ IDK + D F  I  KL+G+++    K
Sbjct: 76  PTLIDKGRHDNFNYIVMKLLGKSLQDAIK 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,501,210
Number of Sequences: 27780
Number of extensions: 152839
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)