Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30634
         (387 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.70 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   2.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   3.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 208 SVHSGSAHGPHGSPADDDTAPPRL 279
           +V+ GSA   HGSPA    APP+L
Sbjct: 435 AVNLGSACRIHGSPA-TTAAPPQL 457


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 205 GSVHSGSAHGPHGSP 249
           GSVH+GS +G   SP
Sbjct: 312 GSVHNGSNNGSPRSP 326


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
          protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 39 YYVPFRMWTHTICSG 83
          YY     W HT+ SG
Sbjct: 8  YYGDVYQWNHTVSSG 22


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 17  QFPNIVNVLRAIPDV 61
           +FPN+V VL   P V
Sbjct: 866 KFPNLVEVLDEFPSV 880


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,107
Number of Sequences: 438
Number of extensions: 1693
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)