Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30634
         (387 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04445.1 68414.m00436 zinc finger (C2H2 type) family protein ...    33   0.050
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9...    28   1.9  
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu...    28   2.5  
At2g17440.1 68415.m02012 leucine-rich repeat family protein cont...    27   4.4  
At5g43770.1 68418.m05353 proline-rich family protein contains pr...    27   5.8  
At3g27820.1 68416.m03470 monodehydroascorbate reductase, putativ...    27   5.8  
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp...    26   7.6  

>At1g04445.1 68414.m00436 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 172

 Score = 33.5 bits (73), Expect = 0.050
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +1

Query: 103 QHRETFQNR*EQTRFI*ENHFQVNWSQRGSAVQEGSVHSGSAHGPHGSP 249
           +H      R     F   N F VN+ +RG    +G  H GS H P  SP
Sbjct: 54  RHYTNVNGRNPNPDFQARNQFDVNYYRRGYLDDQGRFHKGSPHAPAMSP 102


>At5g11490.1 68418.m01341 adaptin family protein similar to
           SP|Q9WV76 Adapter-related protein complex 4 beta 1
           subunit (Beta subunit of AP- 4) {Mus musculus},
           beta-adaptin Drosophila 1 {Drosophila melanogaster}
           GI:434902; contains Pfam profile: PF01602 Adaptin N
           terminal region
          Length = 841

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 125 IDKSKRDLFKKITSKL-IGRNVGQLFKKEV 211
           +D SKRDL+KK+ S + IG +V  +F + V
Sbjct: 40  VDDSKRDLYKKVISYMTIGIDVSSVFGEMV 69


>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
           putative similar to multidrug resistant P-glycoprotein
           GI:4204793 from [Solanum tuberosum]
          Length = 1230

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 166 QVNWSQRGSAVQEGSVHSGSAHGPHGSPADDDT 264
           ++N   +   + +GS+ SGS+ G + +  DDD+
Sbjct: 592 EINKESKRLEISDGSISSGSSRGNNSTRQDDDS 624


>At2g17440.1 68415.m02012 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeats
          Length = 526

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +2

Query: 8   LRPQFPNIVNVLRAIPDVDAHDLQRLE--DKLANNTGKPSKIDKSKRDLFKKITSKLIGR 181
           LRP+  ++      I +V+  D  RLE  DKL   +   S++     ++FK++   L+  
Sbjct: 20  LRPEIDDVETATSLIQNVEKEDRNRLEAIDKLVKTSS--SEVPLELFNVFKEMKKSLVRF 77

Query: 182 NVGQLFKKEVFIVDL 226
              +  ++   I+DL
Sbjct: 78  QSTEQTREATKILDL 92


>At5g43770.1 68418.m05353 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 187

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 187 GSAVQEGSVHSGSAHGPHGSPADDDTAPPRLDLLFAHTPPT*PTVKSIP 333
           G +  E  + SG + GP  +P +    P   ++  + TPP   TV S P
Sbjct: 67  GGSPSEKELPSGPSRGPELAPLEVPELPNIPEISPSETPPEVTTVPSDP 115


>At3g27820.1 68416.m03470 monodehydroascorbate reductase, putative
           similar to cytosolic monodehydroascorbate reductase
           GB:BAA77214 [Oryza sativa]
          Length = 488

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 359 LDTKWYSQHGIDLTVG 312
           L  KWY  HGI+L +G
Sbjct: 76  LTPKWYKDHGIELVLG 91


>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein similar to human splicing
           factor GB:CAA59494 GI:899298 from [Homo sapiens];
           contains Pfam profile PF01805: Surp module
          Length = 735

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 214 HSGSAHGPHGSPADDDTAPPRLDLLFAHTPP 306
           H  S  GPHG P+   + PP++  +    PP
Sbjct: 584 HQLSMSGPHGHPSMMMSRPPQMQPVMRVPPP 614


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,006,958
Number of Sequences: 28952
Number of extensions: 142773
Number of successful extensions: 369
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)