Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30633
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0210 - 15617770-15618453                                         31   0.94 
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253...    28   8.7  

>12_02_0210 - 15617770-15618453
          Length = 227

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 543 DNAFLHNGITSGLRSLSVDFILPCSESYVYITDDTTRDLIGLLASGLAF-TKIQPRQVI 716
           DNA   N I+   +S +V   L  ++SY   T   T      +  G AF T++QPRQ I
Sbjct: 158 DNAAWQNEISFLRKSRNVSSKLGTTQSYTVTTVIATWSSAWAIVCGFAFCTRVQPRQAI 216


>11_06_0442 -
           23622633-23623000,23623149-23623721,23624795-23625335,
           23625807-23625982,23626081-23626804
          Length = 793

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 457 IPGIRKQVKPAALLLFNNMKNNRISGKTSTMLF-STTVSLVD 579
           IP +    KP   L++ N++NN +SG+    LF STT S +D
Sbjct: 80  IPQLLGSNKP---LIWVNLQNNSLSGEIPPSLFNSTTTSYID 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,790,744
Number of Sequences: 37544
Number of extensions: 317350
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)