Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30633
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g10440.1 68415.m01097 hypothetical protein                          33   0.15 
At1g79790.1 68414.m09313 haloacid dehalogenase-like hydrolase fa...    29   2.4  
At1g60530.1 68414.m06814 dynamin family protein similar to mx2 p...    29   2.4  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    29   3.2  
At2g33580.1 68415.m04115 protein kinase family protein / peptido...    29   4.2  
At3g53680.1 68416.m05928 PHD finger transcription factor, putati...    28   5.5  

>At2g10440.1 68415.m01097 hypothetical protein
          Length = 935

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 440 IQDIWISQV*GSKLNQQHCYFLII*RTTAFQERHRQCFSPQRYH 571
           +Q  WI ++   KL+ +H  F +    ++  E+HR  FS   YH
Sbjct: 351 MQAQWIEKLKAGKLSMEHLMFFLNVHRSSVSEKHRDKFSQYEYH 394


>At1g79790.1 68414.m09313 haloacid dehalogenase-like hydrolase
           family protein contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 245

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 110 YDIDGVKYTNDSDYEYKEGTFQ-FQNVALEDHEKFLIRQNLIPYNFIDD 253
           +D++G+K    S Y Y +G  +  Q +A +D E        I YN I+D
Sbjct: 111 FDLEGLKECMRSGYSYLDGMQELLQTLAADDFEIHAFTNYPIWYNIIED 159


>At1g60530.1 68414.m06814 dynamin family protein similar to mx2
           protein GI:5578742 from [Mus musculus musculus];
           contains Pfam profile PF00350: Dynamin family
          Length = 301

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 506 LKSSNAAGLTCFLIPGISRYPVS--TNHILEQIASTIVK 396
           +K +N   LT   +PGI+R PV+    +I EQI+  I+K
Sbjct: 156 VKKNNVPDLTMVDLPGITRVPVNGQPENIYEQISRMIMK 194


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +3

Query: 528 FRKDIDNAFLHNGITSGLRSLSVDFILPCSESYVYITDDTTRDLIGLLASGLAFT 692
           F+ D+++ F H      L S + D   PCS SYV     T+R +I L   GLA T
Sbjct: 43  FKSDLNDPFSH------LESWTEDDNTPCSWSYVKCNPKTSR-VIELSLDGLALT 90


>At2g33580.1 68415.m04115 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           protein kinase [Arabidopsis thaliana] GI:2852449;
           contains Pfam profiles PF01476: LysM domain, PF00069:
           Protein kinase domain
          Length = 664

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 473 FLIPGI-SRYPVSTNHILEQIASTIVKTDINSLPT 372
           F+ P + + YP+   + + Q+A + V TD+NS P+
Sbjct: 598 FMDPSLGNEYPLELAYTMAQLAKSCVATDLNSRPS 632


>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
           predicted proteins, Arabidopsis thaliana
          Length = 839

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 540 IDNAFLHNGITSG-LRSLSVDFILPCSESYVYITDDTTRDLIGLLASGLAFTKIQPRQV 713
           +DNA     ITS   +S S D +  CS SY  ITD+   +    LA+  A      R++
Sbjct: 65  VDNASSFRDITSNPAKSSSGDRVGSCSGSYETITDEKHSEYCSSLANSDAVPSSFEREI 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,314,156
Number of Sequences: 28952
Number of extensions: 284824
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)